2014
|
Rockwell, Nathan C; Duanmu, Deqiang; Martin, Shelley S; Bachy, Charles; Price, Dana C; Bhattacharya, Debashish; Worden, Alexandra Z; Lagarias, John Clark Eukaryotic algal phytochromes span the visible spectrum Journal Article In: Proceedings of the National Academy of Sciences of the United States of America, vol. 111, no. 10, pp. 3871-3876, 2014. @article{RID:052914124026-145b,
title = {Eukaryotic algal phytochromes span the visible spectrum},
author = {Nathan C Rockwell and Deqiang Duanmu and Shelley S Martin and Charles Bachy and Dana C Price and Debashish Bhattacharya and Alexandra Z Worden and John Clark Lagarias},
year = {2014},
date = {2014-01-01},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
volume = {111},
number = {10},
pages = {3871-3876},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Gan, Fei; Zhang, Shuyi; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Bryant, Donald A Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light Journal Article In: Science, vol. 345, no. 6202, pp. 1312-1317, 2014. @article{RID:0105151700995-155b,
title = {Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light},
author = {Fei Gan and Shuyi Zhang and Nathan C Rockwell and Shelley S Martin and John Clark Lagarias and Donald A Bryant},
year = {2014},
date = {2014-01-01},
journal = {Science},
volume = {345},
number = {6202},
pages = {1312-1317},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Lim, Sunghyuk; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Ames, James B H-1, N-15, and C-13 chemical shift assignments of cyanobacteriochrome NpF2164g3 in the photoproduct state Journal Article In: Biomolecular Nmr Assignments, vol. 8, no. 2, pp. 259-262, 2014. @article{RID:0105151700995-154b,
title = {H-1, N-15, and C-13 chemical shift assignments of cyanobacteriochrome NpF2164g3 in the photoproduct state},
author = {Sunghyuk Lim and Nathan C Rockwell and Shelley S Martin and John Clark Lagarias and James B Ames},
year = {2014},
date = {2014-01-01},
journal = {Biomolecular Nmr Assignments},
volume = {8},
number = {2},
pages = {259-262},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kim, Peter W; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S Heterogeneous photodynamics of the Pfr state in the cyanobacteriai phytochrome Cph1 Journal Article In: Biochemistry, vol. 53, no. 28, pp. 4601-4611, 2014. @article{RID:0820141112359-149b,
title = {Heterogeneous photodynamics of the Pfr state in the cyanobacteriai phytochrome Cph1},
author = {Peter W Kim and Nathan C Rockwell and Shelley S Martin and John Clark Lagarias and Delmar S Larsen},
year = {2014},
date = {2014-01-01},
journal = {Biochemistry},
volume = {53},
number = {28},
pages = {4601-4611},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Duanmu, Deqiang; Bachy, Charles; Sudek, Sebastian; Wong, Chee-Hong; Jimenez, Valeria; Rockwell, Nathan C; Martin, Shelley S; Ngan, Chew Yee; Reistetter, Emily N; van Baren, Marijke J; Price, Dana C; Wei, Chia-Lin; Reyes-Prieto, Adrian; Lagarias, John Clark; Worden, Alexandra Z Marine algae and land plants share conserved phytochrome signaling systems Journal Article In: Proceedings of the National Academy of Sciences of the United States of America, vol. 111, no. 44, pp. 15827-15832, 2014. @article{RID:0105151700995-153b,
title = {Marine algae and land plants share conserved phytochrome signaling systems},
author = {Deqiang Duanmu and Charles Bachy and Sebastian Sudek and Chee-Hong Wong and Valeria Jimenez and Nathan C Rockwell and Shelley S Martin and Chew Yee Ngan and Emily N Reistetter and Marijke J van Baren and Dana C Price and Chia-Lin Wei and Adrian Reyes-Prieto and John Clark Lagarias and Alexandra Z Worden},
year = {2014},
date = {2014-01-01},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
volume = {111},
number = {44},
pages = {15827-15832},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Gottlieb, Sean M; Chang, Che-Wei; Martin, Shelley S; Rockwell, Nathan C; Lagarias, John Clark; Larsen, Delmar S Optically guided photoactivity: Coordinating tautomerization, photoisomerization, inhomogeneity, and reactive intermediates within the RcaE cyanobacteriochrome Journal Article In: Journal of Physical Chemistry Letters, vol. 5, no. 9, pp. 1527-1533, 2014. @article{RID:052914124026-144b,
title = {Optically guided photoactivity: Coordinating tautomerization, photoisomerization, inhomogeneity, and reactive intermediates within the RcaE cyanobacteriochrome},
author = {Sean M Gottlieb and Che-Wei Chang and Shelley S Martin and Nathan C Rockwell and John Clark Lagarias and Delmar S Larsen},
year = {2014},
date = {2014-01-01},
journal = {Journal of Physical Chemistry Letters},
volume = {5},
number = {9},
pages = {1527-1533},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Chen, Andrew; Li, Chengxia; Hu, Wei; Lau, Mei Yee; Lin, Huiqiong; Rockwell, Nathan C; Martin, Shelley S; Jernstedt, Judith A; Lagarias, John Clark; Dubcovsky, Jorge PHYTOCHROME C plays a major role in the acceleration of wheat flowering under long-day photoperiod Journal Article In: Proceedings of the National Academy of Sciences of the United States of America, vol. 111, no. 28, pp. 10037-10044, 2014. @article{RID:0820141112359-150b,
title = {PHYTOCHROME C plays a major role in the acceleration of wheat flowering under long-day photoperiod},
author = {Andrew Chen and Chengxia Li and Wei Hu and Mei Yee Lau and Huiqiong Lin and Nathan C Rockwell and Shelley S Martin and Judith A Jernstedt and John Clark Lagarias and Jorge Dubcovsky},
year = {2014},
date = {2014-01-01},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
volume = {111},
number = {28},
pages = {10037-10044},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Lim, Sunghyuk; Rockwell, Nathan C; Martin, Shelley S; Dallas, Jerry L; Lagarias, John Clark; Ames, James B Photoconversion changes bilin chromophore conjugation and protein secondary structure in the violet/orange cyanobacteriochrome NpF2163g3 Journal Article In: Photochemical & Photobiological Sciences, vol. 13, no. 6, pp. 951-962, 2014. @article{RID:0820141112360-146b,
title = {Photoconversion changes bilin chromophore conjugation and protein secondary structure in the violet/orange cyanobacteriochrome NpF2163g3},
author = {Sunghyuk Lim and Nathan C Rockwell and Shelley S Martin and Jerry L Dallas and John Clark Lagarias and James B Ames},
year = {2014},
date = {2014-01-01},
journal = {Photochemical & Photobiological Sciences},
volume = {13},
number = {6},
pages = {951-962},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Lim, Sunghyuk; Rockwell, Nathan C; Martin, Shelley S; Dallas, Jerry L; Lagarias, John Clark; Ames, James B Photoconversion changes bilin chromophore conjugation and protein secondary structure in the violet/orange cyanobacteriochrome NpF2163g3 (vol 13, pg 951, 2014) Journal Article In: Photochemical & Photobiological Sciences, vol. 13, no. 9, pp. 1360, 2014. @article{RID:1020161734887-170b,
title = {Photoconversion changes bilin chromophore conjugation and protein secondary structure in the violet/orange cyanobacteriochrome NpF2163g3 (vol 13, pg 951, 2014)},
author = {Sunghyuk Lim and Nathan C Rockwell and Shelley S Martin and Jerry L Dallas and John Clark Lagarias and James B Ames},
year = {2014},
date = {2014-01-01},
journal = {Photochemical & Photobiological Sciences},
volume = {13},
number = {9},
pages = {1360},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Gottlieb, Sean M; Kim, Peter W; Corley, Scott C; Madsen, Dorte; Hanke, Samuel J; Chang, Che-Wei; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S Primary and secondary photodynamics of the violet/orange dual-cysteine NpF2164g3 cyanobacteriochrome domain from Nostoc punctiforme Journal Article In: Biochemistry, vol. 53, no. 6, pp. 1029-1040, 2014. @article{RID:0403141802598-142b,
title = {Primary and secondary photodynamics of the violet/orange dual-cysteine NpF2164g3 cyanobacteriochrome domain from Nostoc punctiforme},
author = {Sean M Gottlieb and Peter W Kim and Scott C Corley and Dorte Madsen and Samuel J Hanke and Che-Wei Chang and Nathan C Rockwell and Shelley S Martin and John Clark Lagarias and Delmar S Larsen},
year = {2014},
date = {2014-01-01},
journal = {Biochemistry},
volume = {53},
number = {6},
pages = {1029-1040},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2013
|
Hirose, Y; Rockwell, N C; Nishiyama, K; Narikawa, R; Ukaji, Y; Inomata, K; Lagarias, J C; Ikeuchi, M Green/red cyanobacteriochromes regulate complementary chromatic acclimation via a protochromic photocycle Journal Article In: Proceedings of the National Academy of Sciences of the United States of America, vol. 110, no. 13, pp. 4974-4979, 2013. @article{RID:121913175250-4b,
title = {Green/red cyanobacteriochromes regulate complementary chromatic acclimation via a protochromic photocycle},
author = {Y Hirose and N C Rockwell and K Nishiyama and R Narikawa and Y Ukaji and K Inomata and J C Lagarias and M Ikeuchi},
year = {2013},
date = {2013-01-01},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
volume = {110},
number = {13},
pages = {4974-4979},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kabasakal, B V; Gae, D D; Li, J; Lagarias, J C; Koehl, P; Fisher, A J His74 conservation in the bilin reductase PcyA family reflects an important role in protein-substrate structure and dynamics Journal Article In: Archives of Biochemistry and Biophysics, vol. 537, no. 2, pp. 233-242, 2013. @article{RID:121913175250-20b,
title = {His74 conservation in the bilin reductase PcyA family reflects an important role in protein-substrate structure and dynamics},
author = {B V Kabasakal and D D Gae and J Li and J C Lagarias and P Koehl and A J Fisher},
year = {2013},
date = {2013-01-01},
journal = {Archives of Biochemistry and Biophysics},
volume = {537},
number = {2},
pages = {233-242},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Gottlieb, Sean M; Kim, Peter W; Rockwell, Nathan C; Hirose, Yuu; Ikeuchi, Masahiko; Lagarias, John Clark; Larsen, Delmar S Primary photodynamics of the green/red-absorbing photoswitching regulator of the chromatic adaptation E domain from Fremyella diplosiphon Journal Article In: Biochemistry, vol. 52, no. 46, pp. 8198-8208, 2013. @article{RID:121913175251-127b,
title = {Primary photodynamics of the green/red-absorbing photoswitching regulator of the chromatic adaptation E domain from Fremyella diplosiphon},
author = {Sean M Gottlieb and Peter W Kim and Nathan C Rockwell and Yuu Hirose and Masahiko Ikeuchi and John Clark Lagarias and Delmar S Larsen},
year = {2013},
date = {2013-01-01},
journal = {Biochemistry},
volume = {52},
number = {46},
pages = {8198-8208},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Duanmu, D; Casero, D; Dent, R M; Gallaher, S; Yang, W Q; Rockwell, N C; Martin, S S; Pellegrini, M; Niyogi, K K; Merchant, S S; Grossman, A R; Lagarias, J C Retrograde bilin signaling enables Chlamydomonas greening and phototrophic survival Journal Article In: Proceedings of the National Academy of Sciences of the United States of America, vol. 110, no. 9, pp. 3621-3626, 2013. @article{RID:121913175251-93b,
title = {Retrograde bilin signaling enables Chlamydomonas greening and phototrophic survival},
author = {D Duanmu and D Casero and R M Dent and S Gallaher and W Q Yang and N C Rockwell and S S Martin and M Pellegrini and K K Niyogi and S S Merchant and A R Grossman and J C Lagarias},
year = {2013},
date = {2013-01-01},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
volume = {110},
number = {9},
pages = {3621-3626},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Hu, W; Franklin, K A; Sharrock, R A; Jones, M A; Harmer, S L; Lagarias, J C Unanticipated regulatory roles for Arabidopsis phytochromes revealed by null mutant analysis Journal Article In: Proceedings of the National Academy of Sciences of the United States of America, vol. 110, no. 4, pp. 1542-1547, 2013. @article{RID:121913175251-73b,
title = {Unanticipated regulatory roles for Arabidopsis phytochromes revealed by null mutant analysis},
author = {W Hu and K A Franklin and R A Sharrock and M A Jones and S L Harmer and J C Lagarias},
year = {2013},
date = {2013-01-01},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
volume = {110},
number = {4},
pages = {1542-1547},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kim, P W; Rockwell, N C; Freer, L H; Chang, C W; Martin, S S; Lagarias, J C; Larsen, D S Unraveling the Primary Isomerization Dynamics in Cyanobacterial Phytochrome Cph1 with Multipulse Manipulations Journal Article In: Journal of Physical Chemistry Letters, vol. 4, no. 16, pp. 2605-2609, 2013. @article{RID:121913175251-113b,
title = {Unraveling the Primary Isomerization Dynamics in Cyanobacterial Phytochrome Cph1 with Multipulse Manipulations},
author = {P W Kim and N C Rockwell and L H Freer and C W Chang and S S Martin and J C Lagarias and D S Larsen},
year = {2013},
date = {2013-01-01},
journal = {Journal of Physical Chemistry Letters},
volume = {4},
number = {16},
pages = {2605-2609},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2012
|
Kim, P W; Freer, L H; Rockwell, N C; Martin, S S; Lagarias, J C; Larsen, D S Second-Chance Forward Isomerization Dynamics of the Red/Green Cyanobacteriochrome NpR6012g4 from Nostoc punctiforme Journal Article In: Journal of the American Chemical Society, vol. 134, no. 1, pp. 130-133, 2012. @article{RID:121913175252-112,
title = {Second-Chance Forward Isomerization Dynamics of the Red/Green Cyanobacteriochrome NpR6012g4 from Nostoc punctiforme},
author = {P W Kim and L H Freer and N C Rockwell and S S Martin and J C Lagarias and D S Larsen},
year = {2012},
date = {2012-01-01},
journal = {Journal of the American Chemical Society},
volume = {134},
number = {1},
pages = {130-133},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Freer, L H; Kim, P W; Corley, S C; Rockwell, N C; Zhao, L; Thibert, A J; Lagarias, J C; Larsen, D S Chemical Inhomogeneity in the Ultrafast Dynamics of the DXCF Cyanobacteriochrome Tlr0924 Journal Article In: Journal of Physical Chemistry B, vol. 116, no. 35, pp. 10571-10581, 2012. @article{RID:121913175251-42b,
title = {Chemical Inhomogeneity in the Ultrafast Dynamics of the DXCF Cyanobacteriochrome Tlr0924},
author = {L H Freer and P W Kim and S C Corley and N C Rockwell and L Zhao and A J Thibert and J C Lagarias and D S Larsen},
year = {2012},
date = {2012-01-01},
journal = {Journal of Physical Chemistry B},
volume = {116},
number = {35},
pages = {10571-10581},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kim, P W; Freer, L H; Rockwell, N C; Martin, S S; Lagarias, J C; Larsen, D S Femtosecond Photodynamics of the Red/Green Cyanobacteriochrome NpR6012g4 from Nostoc punctiforme. 1. Forward Dynamics Journal Article In: Biochemistry, vol. 51, no. 2, pp. 608-618, 2012. @article{RID:121913175251-63b,
title = {Femtosecond Photodynamics of the Red/Green Cyanobacteriochrome NpR6012g4 from Nostoc punctiforme. 1. Forward Dynamics},
author = {P W Kim and L H Freer and N C Rockwell and S S Martin and J C Lagarias and D S Larsen},
year = {2012},
date = {2012-01-01},
journal = {Biochemistry},
volume = {51},
number = {2},
pages = {608-618},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kim, P W; Freer, L H; Rockwell, N C; Martin, S S; Lagarias, J C; Larsen, D S Femtosecond Photodynamics of the Red/Green Cyanobacteriochrome NpR6012g4 from Nostoc punctiforme. 2. Reverse Dynamics Journal Article In: Biochemistry, vol. 51, no. 2, pp. 619-630, 2012. @article{RID:121913175251-56b,
title = {Femtosecond Photodynamics of the Red/Green Cyanobacteriochrome NpR6012g4 from Nostoc punctiforme. 2. Reverse Dynamics},
author = {P W Kim and L H Freer and N C Rockwell and S S Martin and J C Lagarias and D S Larsen},
year = {2012},
date = {2012-01-01},
journal = {Biochemistry},
volume = {51},
number = {2},
pages = {619-630},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, N C; Martin, S S; Lagarias, J C Mechanistic Insight into the Photosensory Versatility of DXCF Cyanobacteriochromes Journal Article In: Biochemistry, vol. 51, no. 17, pp. 3576-3585, 2012. @article{RID:121913175252-115b,
title = {Mechanistic Insight into the Photosensory Versatility of DXCF Cyanobacteriochromes},
author = {N C Rockwell and S S Martin and J C Lagarias},
year = {2012},
date = {2012-01-01},
journal = {Biochemistry},
volume = {51},
number = {17},
pages = {3576-3585},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, N C; Martin, S S; Gulevich, A G; Lagarias, J C Phycoviolobilin Formation and Spectral Tuning in the DXCF Cyanobacteriochrome Subfamily Journal Article In: Biochemistry, vol. 51, no. 7, pp. 1449-1463, 2012. @article{RID:121913175252-114b,
title = {Phycoviolobilin Formation and Spectral Tuning in the DXCF Cyanobacteriochrome Subfamily},
author = {N C Rockwell and S S Martin and A G Gulevich and J C Lagarias},
year = {2012},
date = {2012-01-01},
journal = {Biochemistry},
volume = {51},
number = {7},
pages = {1449-1463},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Park, E; Park, J; Kim, J; Nagatani, A; Lagarias, J C; Choi, G Phytochrome B inhibits binding of phytochrome-interacting factors to their target promoters Journal Article In: Plant Journal, vol. 72, no. 4, pp. 537-546, 2012. @article{RID:121913175252-80b,
title = {Phytochrome B inhibits binding of phytochrome-interacting factors to their target promoters},
author = {E Park and J Park and J Kim and A Nagatani and J C Lagarias and G Choi},
year = {2012},
date = {2012-01-01},
journal = {Plant Journal},
volume = {72},
number = {4},
pages = {537-546},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kim, P W; Freer, L H; Rockwell, N C; Martin, S S; Lagarias, J C; Larsen, D S Second-Chance Forward Isomerization Dynamics of the Red/Green Cyanobacteriochrome NpR6012g4 from Nostoc punctiforme Journal Article In: Journal of the American Chemical Society, vol. 134, no. 1, pp. 130-133, 2012. @article{RID:121913175252-112b,
title = {Second-Chance Forward Isomerization Dynamics of the Red/Green Cyanobacteriochrome NpR6012g4 from Nostoc punctiforme},
author = {P W Kim and L H Freer and N C Rockwell and S S Martin and J C Lagarias and D S Larsen},
year = {2012},
date = {2012-01-01},
journal = {Journal of the American Chemical Society},
volume = {134},
number = {1},
pages = {130-133},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kim, P W; Pan, J; Rockwell, N C; Chang, C W; Taylor, K C; Lagarias, J C; Larsen, D S Ultrafast E to Z photoisomerization dynamics of the Cph1 phytochrome Journal Article In: Chemical Physics Letters, vol. 549, pp. 86-92, 2012. @article{RID:121913175252-81b,
title = {Ultrafast E to Z photoisomerization dynamics of the Cph1 phytochrome},
author = {P W Kim and J Pan and N C Rockwell and C W Chang and K C Taylor and J C Lagarias and D S Larsen},
year = {2012},
date = {2012-01-01},
journal = {Chemical Physics Letters},
volume = {549},
pages = {86-92},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2011
|
Rockwell, N C; Martin, S S; Feoktistova, K; Lagarias, J C Diverse two-cysteine photocycles in phytochromes and cyanobacteriochromes Journal Article In: Proceedings of the National Academy of Sciences of the United States of America, vol. 108, no. 29, pp. 11854-11859, 2011. @article{RID:121913175252-120b,
title = {Diverse two-cysteine photocycles in phytochromes and cyanobacteriochromes},
author = {N C Rockwell and S S Martin and K Feoktistova and J C Lagarias},
year = {2011},
date = {2011-01-01},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
volume = {108},
number = {29},
pages = {11854-11859},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Song, J Y; Cho, H S; Cho, J I; Jeon, J S; Lagarias, J C; Park, Y I Near-UV cyanobacteriochrome signaling system elicits negative phototaxis in the cyanobacterium Synechocystis sp PCC 6803 Journal Article In: Proceedings of the National Academy of Sciences of the United States of America, vol. 108, no. 26, pp. 10780-10785, 2011. @article{RID:121913175252-118b,
title = {Near-UV cyanobacteriochrome signaling system elicits negative phototaxis in the cyanobacterium Synechocystis sp PCC 6803},
author = {J Y Song and H S Cho and J I Cho and J S Jeon and J C Lagarias and Y I Park},
year = {2011},
date = {2011-01-01},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
volume = {108},
number = {26},
pages = {10780-10785},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2010
|
Rockwell, N C; Lagarias, J C A Brief History of Phytochromes Journal Article In: Chemphyschem, vol. 11, no. 6, pp. 1172-1180, 2010. @article{RID:121913175253-31b,
title = {A Brief History of Phytochromes},
author = {N C Rockwell and J C Lagarias},
year = {2010},
date = {2010-01-01},
journal = {Chemphyschem},
volume = {11},
number = {6},
pages = {1172-1180},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Shang, L X; Rockwell, N C; Martin, S S; Lagarias, J C Biliverdin Amides Reveal Roles for Propionate Side Chains in Bilin Reductase Recognition and in Holophytochrome Assembly and Photoconversion Journal Article In: Biochemistry, vol. 49, no. 29, pp. 6070-6082, 2010. @article{RID:121913175253-55b,
title = {Biliverdin Amides Reveal Roles for Propionate Side Chains in Bilin Reductase Recognition and in Holophytochrome Assembly and Photoconversion},
author = {L X Shang and N C Rockwell and S S Martin and J C Lagarias},
year = {2010},
date = {2010-01-01},
journal = {Biochemistry},
volume = {49},
number = {29},
pages = {6070-6082},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kohler, A C; Gae, D D; Richley, M A; Stoll, S; Gunn, A; Lim, S; Martin, S S; Doukov, T I; Britt, R D; Ames, J B; Lagarias, J C; Fisher, A J Structural Basis for Hydration Dynamics in Radical Stabilization of Bilin Reductase Mutants Journal Article In: Biochemistry, vol. 49, no. 29, pp. 6206-6218, 2010. @article{RID:121913175253-44b,
title = {Structural Basis for Hydration Dynamics in Radical Stabilization of Bilin Reductase Mutants},
author = {A C Kohler and D D Gae and M A Richley and S Stoll and A Gunn and S Lim and S S Martin and T I Doukov and R D Britt and J B Ames and J C Lagarias and A J Fisher},
year = {2010},
date = {2010-01-01},
journal = {Biochemistry},
volume = {49},
number = {29},
pages = {6206-6218},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Hagiwara, Y; Sugishima, M; Khawn, H; Kinoshita, H; Inomata, K; Shang, L X; Lagarias, J C; Takahashi, Y; Fukuyama, K Structural Insights into Vinyl Reduction Regiospecificity of Phycocyanobilin:Ferredoxin Oxidoreductase (PcyA) Journal Article In: Journal of Biological Chemistry, vol. 285, no. 2, pp. 1000-1007, 2010. @article{RID:121913175253-40b,
title = {Structural Insights into Vinyl Reduction Regiospecificity of Phycocyanobilin:Ferredoxin Oxidoreductase (PcyA)},
author = {Y Hagiwara and M Sugishima and H Khawn and H Kinoshita and K Inomata and L X Shang and J C Lagarias and Y Takahashi and K Fukuyama},
year = {2010},
date = {2010-01-01},
journal = {Journal of Biological Chemistry},
volume = {285},
number = {2},
pages = {1000-1007},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2009
|
Hu, W; Su, Y S; Lagarias, J C A Light-Independent Allele of Phytochrome B Faithfully Recapitulates Photomorphogenic Transcriptional Networks Journal Article In: Molecular Plant, vol. 2, no. 1, pp. 166-182, 2009. @article{RID:121913175253-23b,
title = {A Light-Independent Allele of Phytochrome B Faithfully Recapitulates Photomorphogenic Transcriptional Networks},
author = {W Hu and Y S Su and J C Lagarias},
year = {2009},
date = {2009-01-01},
journal = {Molecular Plant},
volume = {2},
number = {1},
pages = {166-182},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, N C; Shang, L; Martin, S S; Lagarias, J C Distinct classes of red/far-red photochemistry within the phytochrome superfamily Journal Article In: Proceedings of the National Academy of Sciences of the United States of America, vol. 106, no. 15, pp. 6123-6127, 2009. @article{RID:121913175253-37b,
title = {Distinct classes of red/far-red photochemistry within the phytochrome superfamily},
author = {N C Rockwell and L Shang and S S Martin and J C Lagarias},
year = {2009},
date = {2009-01-01},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
volume = {106},
number = {15},
pages = {6123-6127},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Spillane, K M; Dasgupta, J; Lagarias, J C; Mathies, R A Homogeneity of Phytochrome Cph1 Vibronic Absorption Revealed by Resonance Raman Intensity Analysis Journal Article In: Journal of the American Chemical Society, vol. 131, no. 39, pp. 13946-+, 2009. @article{RID:121913175254-121b,
title = {Homogeneity of Phytochrome Cph1 Vibronic Absorption Revealed by Resonance Raman Intensity Analysis},
author = {K M Spillane and J Dasgupta and J C Lagarias and R A Mathies},
year = {2009},
date = {2009-01-01},
journal = {Journal of the American Chemical Society},
volume = {131},
number = {39},
pages = {13946-+},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Stoll, S; Gunn, A; Brynda, M; Sughrue, W; Kohler, A C; Ozarowski, A; Fisher, A J; Lagarias, J C; Britt, R D Structure of the Biliverdin Radical Intermediate in Phycocyanobilin:Ferredoxin Oxidoreductase Identified by High-Field EPR and DFT Journal Article In: Journal of the American Chemical Society, vol. 131, no. 5, pp. 1986-1995, 2009. @article{RID:121913175254-72b,
title = {Structure of the Biliverdin Radical Intermediate in Phycocyanobilin:Ferredoxin Oxidoreductase Identified by High-Field EPR and DFT},
author = {S Stoll and A Gunn and M Brynda and W Sughrue and A C Kohler and A Ozarowski and A J Fisher and J C Lagarias and R D Britt},
year = {2009},
date = {2009-01-01},
journal = {Journal of the American Chemical Society},
volume = {131},
number = {5},
pages = {1986-1995},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Dasgupta, J; Frontiera, R R; Taylor, K C; Lagarias, J C; Mathies, R A Ultrafast excited-state isomerization in phytochrome revealed by femtosecond stimulated Raman spectroscopy Journal Article In: Proceedings of the National Academy of Sciences of the United States of America, vol. 106, no. 6, pp. 1784-1789, 2009. @article{RID:121913175254-1e,
title = {Ultrafast excited-state isomerization in phytochrome revealed by femtosecond stimulated Raman spectroscopy},
author = {J Dasgupta and R R Frontiera and K C Taylor and J C Lagarias and R A Mathies},
year = {2009},
date = {2009-01-01},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
volume = {106},
number = {6},
pages = {1784-1789},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2008
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Rockwell, N C; Njuguna, S L; Roberts, L; Castillo, E; Parson, V L; Dwojak, S; Lagarias, J C; Spiller, S C A second conserved GAF domain cysteine is required for the blue/green photoreversibility of cyanobacteriochrome Tlr0924 from Thermosynechococcus elongatus Journal Article In: Biochemistry, vol. 47, no. 27, pp. 7304-7316, 2008. @article{RID:121913175254-85b,
title = {A second conserved GAF domain cysteine is required for the blue/green photoreversibility of cyanobacteriochrome Tlr0924 from Thermosynechococcus elongatus},
author = {N C Rockwell and S L Njuguna and L Roberts and E Castillo and V L Parson and S Dwojak and J C Lagarias and S C Spiller},
year = {2008},
date = {2008-01-01},
journal = {Biochemistry},
volume = {47},
number = {27},
pages = {7304-7316},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Dasgupta, J; Frontiera, R; Taylor, K C; Lagarias, J C; Mathies, R A PHYS 8-Ultrafast excited state isomerization in phytochrome revealed by femtosecond stimulated Raman spectroscopy Journal Article In: Abstracts of Papers of the American Chemical Society, vol. 236, 2008. @article{RID:121913175254-122b,
title = {PHYS 8-Ultrafast excited state isomerization in phytochrome revealed by femtosecond stimulated Raman spectroscopy},
author = {J Dasgupta and R Frontiera and K C Taylor and J C Lagarias and R A Mathies},
year = {2008},
date = {2008-01-01},
journal = {Abstracts of Papers of the American Chemical Society},
volume = {236},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2007
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Tu, S L; Rockwell, N C; Lagarias, J C; Fisher, A J Insight into the radical mechanism of phycocyanobilin-ferredoxin oxidoreductase (PcyA) revealed by X-ray crystallography and biochemical measurements Journal Article In: Biochemistry, vol. 46, no. 6, pp. 1484-1494, 2007. @article{RID:121913175254-60b,
title = {Insight into the radical mechanism of phycocyanobilin-ferredoxin oxidoreductase (PcyA) revealed by X-ray crystallography and biochemical measurements},
author = {S L Tu and N C Rockwell and J C Lagarias and A J Fisher},
year = {2007},
date = {2007-01-01},
journal = {Biochemistry},
volume = {46},
number = {6},
pages = {1484-1494},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Su, Y S; Lagarias, J C Light-independent phytochrome signaling mediated by dominant GAF domain tyrosine mutants of Arabidopsis phytochromes in transgenic plants Journal Article In: Plant Cell, vol. 19, no. 7, pp. 2124-2139, 2007. @article{RID:121913175254-74b,
title = {Light-independent phytochrome signaling mediated by dominant GAF domain tyrosine mutants of Arabidopsis phytochromes in transgenic plants},
author = {Y S Su and J C Lagarias},
year = {2007},
date = {2007-01-01},
journal = {Plant Cell},
volume = {19},
number = {7},
pages = {2124-2139},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Su, Y S; Lagarias, J C Light-independent phytochrome signaling mediated by dominant GAF domain tyrosine mutants of Arabidopsis phytochromes in transgenic plants. (vol 19, pg 2124, 2007) Journal Article In: Plant Cell, vol. 19, no. 8, pp. 2693-2694, 2007. @article{RID:121913175255-123b,
title = {Light-independent phytochrome signaling mediated by dominant GAF domain tyrosine mutants of Arabidopsis phytochromes in transgenic plants. (vol 19, pg 2124, 2007)},
author = {Y S Su and J C Lagarias},
year = {2007},
date = {2007-01-01},
journal = {Plant Cell},
volume = {19},
number = {8},
pages = {2693-2694},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, N C; Lagarias, J C Flexible mapping of homology onto structure with homolmapper Journal Article In: BMC Bioinformatics, vol. 8, pp. 1-13, 2007. @article{RID:121913175254-58b,
title = {Flexible mapping of homology onto structure with homolmapper},
author = {N C Rockwell and J C Lagarias},
year = {2007},
date = {2007-01-01},
journal = {BMC Bioinformatics},
volume = {8},
pages = {1-13},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2006
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Tu, S L; Sughrue, W; Britt, R D; Lagarias, J C A conserved histidine-aspartate pair is required for exovinyl reduction of biliverdin by a cyanobacterial phycocyanobilin : ferredoxin oxidoreductase Journal Article In: Journal of Biological Chemistry, vol. 281, no. 6, pp. 3127-3136, 2006. @article{RID:121913175255-61b,
title = {A conserved histidine-aspartate pair is required for exovinyl reduction of biliverdin by a cyanobacterial phycocyanobilin : ferredoxin oxidoreductase},
author = {S L Tu and W Sughrue and R D Britt and J C Lagarias},
year = {2006},
date = {2006-01-01},
journal = {Journal of Biological Chemistry},
volume = {281},
number = {6},
pages = {3127-3136},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, N C; Su, Y S; Lagarias, J C Phytochrome structure and signaling mechanisms Book Chapter In: Annual Review of Plant Biology, vol. 57, pp. 837-858, 2006. @inbook{RID:121913175255-96b,
title = {Phytochrome structure and signaling mechanisms},
author = {N C Rockwell and Y S Su and J C Lagarias},
year = {2006},
date = {2006-01-01},
booktitle = {Annual Review of Plant Biology},
volume = {57},
pages = {837-858},
series = {Annual Review of Plant Biology},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
|
Miller, A E; Fischer, A J; Laurence, T; Hollars, C W; Saykally, R J; Lagarias, J C; Huser, T Single-molecule dynamics of phytochrome-bound fluorophores probed by fluorescence correlation spectroscopy Journal Article In: Proceedings of the National Academy of Sciences of the United States of America, vol. 103, no. 30, pp. 11136-11141, 2006. @article{RID:121913175255-53b,
title = {Single-molecule dynamics of phytochrome-bound fluorophores probed by fluorescence correlation spectroscopy},
author = {A E Miller and A J Fischer and T Laurence and C W Hollars and R J Saykally and J C Lagarias and T Huser},
year = {2006},
date = {2006-01-01},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
volume = {103},
number = {30},
pages = {11136-11141},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, N C; Lagarias, J C The structure of phytochrome: A picture is worth a thousand spectra Journal Article In: Plant Cell, vol. 18, no. 1, pp. 4-14, 2006. @article{RID:121913175255-47b,
title = {The structure of phytochrome: A picture is worth a thousand spectra},
author = {N C Rockwell and J C Lagarias},
year = {2006},
date = {2006-01-01},
journal = {Plant Cell},
volume = {18},
number = {1},
pages = {4-14},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2005
|
Miller, A E; Fischer, A J; Hollars, C W; Saykally, R J; Huser, T R; Lagarias, J C Fluorescence correlation spectroscopic analysis of the monomer/dimer equilibrium of a red fluorescent mutant of Cph1 Journal Article In: Abstracts of Papers of the American Chemical Society, vol. 229, pp. U780, 2005. @article{RID:121913175255-54b,
title = {Fluorescence correlation spectroscopic analysis of the monomer/dimer equilibrium of a red fluorescent mutant of Cph1},
author = {A E Miller and A J Fischer and C W Hollars and R J Saykally and T R Huser and J C Lagarias},
year = {2005},
date = {2005-01-01},
journal = {Abstracts of Papers of the American Chemical Society},
volume = {229},
pages = {U780},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Fischer, A J; Rockwell, N C; Jang, A Y; Ernst, L A; Waggoner, A S; Duan, Y; Lei, H X; Lagarias, J C Multiple roles of a conserved GAF domain tyrosine residue in cyanobacterial and plant phytochromes Journal Article In: Biochemistry, vol. 44, no. 46, pp. 15203-15215, 2005. @article{RID:121913175256-36b,
title = {Multiple roles of a conserved GAF domain tyrosine residue in cyanobacterial and plant phytochromes},
author = {A J Fischer and N C Rockwell and A Y Jang and L A Ernst and A S Waggoner and Y Duan and H X Lei and J C Lagarias},
year = {2005},
date = {2005-01-01},
journal = {Biochemistry},
volume = {44},
number = {46},
pages = {15203-15215},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2004
|
Tu, S L; Gunn, A; Toney, M D; Britt, R D; Lagarias, J C Biliverdin reduction by cyanobacterial phycocyanobilin : ferredoxin oxidoreductase (PcyA) proceeds via linear tetrapyrrole radical intermediates Journal Article In: Journal of the American Chemical Society, vol. 126, no. 28, pp. 8682-8693, 2004. @article{RID:121913175256-17b,
title = {Biliverdin reduction by cyanobacterial phycocyanobilin : ferredoxin oxidoreductase (PcyA) proceeds via linear tetrapyrrole radical intermediates},
author = {S L Tu and A Gunn and M D Toney and R D Britt and J C Lagarias},
year = {2004},
date = {2004-01-01},
journal = {Journal of the American Chemical Society},
volume = {126},
number = {28},
pages = {8682-8693},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kami, C; Mukougawa, K; Muramoto, T; Yokota, A; Shinomura, T; Lagarias, J C; Kohchi, T Complementation of phytochrome chromophore-deficient Arabidopsis by expression of phycocyanobilin : ferredoxin oxidoreductase Journal Article In: Proceedings of the National Academy of Sciences of the United States of America, vol. 101, no. 4, pp. 1099-1104, 2004. @article{RID:121913175256-6b,
title = {Complementation of phytochrome chromophore-deficient Arabidopsis by expression of phycocyanobilin : ferredoxin oxidoreductase},
author = {C Kami and K Mukougawa and T Muramoto and A Yokota and T Shinomura and J C Lagarias and T Kohchi},
year = {2004},
date = {2004-01-01},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
volume = {101},
number = {4},
pages = {1099-1104},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
