2023
|
Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark Elucidating the origins of phycocyanobilin biosynthesis and phycobiliproteins Journal Article Proceedings of the National Academy of Sciences, 120 (17), 2023. Links | BibTeX @article{Rockwell_2023,
title = {Elucidating the origins of phycocyanobilin biosynthesis and phycobiliproteins},
author = {Nathan C Rockwell and Shelley S Martin and John Clark Lagarias},
url = {https://doi.org/10.1073%2Fpnas.2300770120},
doi = {10.1073/pnas.2300770120},
year = {2023},
date = {2023-04-01},
journal = {Proceedings of the National Academy of Sciences},
volume = {120},
number = {17},
publisher = {Proceedings of the National Academy of Sciences},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, Nathan C; Lagarias, Clark J GUN4 appeared early in cyanobacterial evolution Journal Article PNAS Nexus, 2023. Links | BibTeX @article{Rockwell_2023b,
title = {GUN4 appeared early in cyanobacterial evolution},
author = {Nathan C Rockwell and Clark J Lagarias},
url = {https://doi.org/10.1093%2Fpnasnexus%2Fpgad131},
doi = {10.1093/pnasnexus/pgad131},
year = {2023},
date = {2023-04-01},
journal = {PNAS Nexus},
publisher = {Oxford University Press (OUP)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2022
|
Rockwell, Nathan C; Moreno, Marcus V; Martin, Shelley S; Lagarias, John Clark Protein–chromophore interactions controlling photoisomerization in red/green cyanobacteriochromes Journal Article Photochemical & Photobiological Sciences, 21 (4), pp. 471–491, 2022. Links | BibTeX @article{Rockwell_2022b,
title = {Protein–chromophore interactions controlling photoisomerization in red/green cyanobacteriochromes},
author = {Nathan C Rockwell and Marcus V Moreno and Shelley S Martin and John Clark Lagarias},
url = {https://doi.org/10.1007%2Fs43630-022-00213-3},
doi = {10.1007/s43630-022-00213-3},
year = {2022},
date = {2022-04-01},
journal = {Photochemical & Photobiological Sciences},
volume = {21},
number = {4},
pages = {471--491},
publisher = {Springer Science and Business Media LLC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2021
|
Blain-Hartung, Matthew; Rockwell, Nathan C; Lagarias, John Clark Natural diversity provides a broad spectrum of cyanobacteriochrome-based diguanylate cyclases Journal Article Plant Physiology, 187 (2), pp. 632–645, 2021. Links | BibTeX @article{Blain_Hartung_2021,
title = {Natural diversity provides a broad spectrum of cyanobacteriochrome-based diguanylate cyclases},
author = {Matthew Blain-Hartung and Nathan C Rockwell and John Clark Lagarias},
url = {https://doi.org/10.1093%2Fplphys%2Fkiab240},
doi = {10.1093/plphys/kiab240},
year = {2021},
date = {2021-05-01},
journal = {Plant Physiology},
volume = {187},
number = {2},
pages = {632--645},
publisher = {Oxford University Press (OUP)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Zhang, Weiqing; Willows, Robert D; Deng, Rui; Li, Zheng; Li, Mengqi; Wang, Yan; Guo, Yunling; Shi, Weida; Fan, Qiuling; Martin, Shelley S; Rockwell, Nathan C; Lagarias, Clark J; Duanmu, Deqiang Bilin-dependent regulation of chlorophyll biosynthesis by GUN4 Journal Article Proceedings of the National Academy of Sciences, 118 (20), 2021. Links | BibTeX @article{Zhang_2021,
title = {Bilin-dependent regulation of chlorophyll biosynthesis by GUN4},
author = {Weiqing Zhang and Robert D Willows and Rui Deng and Zheng Li and Mengqi Li and Yan Wang and Yunling Guo and Weida Shi and Qiuling Fan and Shelley S Martin and Nathan C Rockwell and Clark J Lagarias and Deqiang Duanmu},
url = {https://doi.org/10.1073%2Fpnas.2104443118},
doi = {10.1073/pnas.2104443118},
year = {2021},
date = {2021-05-01},
journal = {Proceedings of the National Academy of Sciences},
volume = {118},
number = {20},
publisher = {Proceedings of the National Academy of Sciences},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Bandara, Sepalika; Rockwell, Nathan C; Zeng, Xiaoli; Ren, Zhong; Wang, Cong; Shin, Heewhan; Martin, Shelley S; Moreno, Marcus V; Lagarias, John Clark; Yang, Xiaojing Crystal structure of a far-red–sensing cyanobacteriochrome reveals an atypical bilin conformation and spectral tuning mechanism Journal Article Proceedings of the National Academy of Sciences, 118 (12), 2021. Links | BibTeX @article{Bandara_2021,
title = {Crystal structure of a far-red–sensing cyanobacteriochrome reveals an atypical bilin conformation and spectral tuning mechanism},
author = {Sepalika Bandara and Nathan C Rockwell and Xiaoli Zeng and Zhong Ren and Cong Wang and Heewhan Shin and Shelley S Martin and Marcus V Moreno and John Clark Lagarias and Xiaojing Yang},
url = {https://doi.org/10.1073%2Fpnas.2025094118},
doi = {10.1073/pnas.2025094118},
year = {2021},
date = {2021-03-01},
journal = {Proceedings of the National Academy of Sciences},
volume = {118},
number = {12},
publisher = {Proceedings of the National Academy of Sciences},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kirpich, Julia S; Chang, Che-Wei; Franse, Jasper; Yu, Qinhong; Escobar, Francisco Velazquez; Jenkins, Adam J; Martin, Shelley S; Narikawa, Rei; Ames, James B; Lagarias, John Clark; Larsen, Delmar S Comparison of the Forward and Reverse Photocycle Dynamics of Two Highly Similar Canonical Red/Green Cyanobacteriochromes Reveals Unexpected Differences Journal Article Biochemistry, 60 (4), pp. 274–288, 2021. Links | BibTeX @article{Kirpich_2021,
title = {Comparison of the Forward and Reverse Photocycle Dynamics of Two Highly Similar Canonical Red/Green Cyanobacteriochromes Reveals Unexpected Differences},
author = {Julia S Kirpich and Che-Wei Chang and Jasper Franse and Qinhong Yu and Francisco Velazquez Escobar and Adam J Jenkins and Shelley S Martin and Rei Narikawa and James B Ames and John Clark Lagarias and Delmar S Larsen},
url = {https://doi.org/10.1021%2Facs.biochem.0c00796},
doi = {10.1021/acs.biochem.0c00796},
year = {2021},
date = {2021-01-01},
journal = {Biochemistry},
volume = {60},
number = {4},
pages = {274--288},
publisher = {American Chemical Society (ACS)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2020
|
Moreno, Marcus V; Rockwell, Nathan C; Mora, Manuel; Fisher, Andrew J; Lagarias, John Clark A far-red cyanobacteriochrome lineage specific for verdins Journal Article Proceedings of the National Academy of Sciences, 117 (45), pp. 27962–27970, 2020. Links | BibTeX @article{Moreno_2020,
title = {A far-red cyanobacteriochrome lineage specific for verdins},
author = {Marcus V Moreno and Nathan C Rockwell and Manuel Mora and Andrew J Fisher and John Clark Lagarias},
url = {https://doi.org/10.1073%2Fpnas.2016047117},
doi = {10.1073/pnas.2016047117},
year = {2020},
date = {2020-10-01},
journal = {Proceedings of the National Academy of Sciences},
volume = {117},
number = {45},
pages = {27962--27970},
publisher = {Proceedings of the National Academy of Sciences},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Jenkins, Adam J; Gottlieb, Sean Marc; Chang, Che-Wei; Kim, Peter W; Hayer, Randeep J; Hanke, Samuel J; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S Conservation and Diversity in the Primary Reverse Photodynamics of the Canonical Red/Green Cyanobacteriochrome Family Journal Article Biochemistry, 59 (41), pp. 4015–4028, 2020. Links | BibTeX @article{Jenkins_2020,
title = {Conservation and Diversity in the Primary Reverse Photodynamics of the Canonical Red/Green Cyanobacteriochrome Family},
author = {Adam J Jenkins and Sean Marc Gottlieb and Che-Wei Chang and Peter W Kim and Randeep J Hayer and Samuel J Hanke and Shelley S Martin and John Clark Lagarias and Delmar S Larsen},
url = {https://doi.org/10.1021%2Facs.biochem.0c00454},
doi = {10.1021/acs.biochem.0c00454},
year = {2020},
date = {2020-10-01},
journal = {Biochemistry},
volume = {59},
number = {41},
pages = {4015--4028},
publisher = {American Chemical Society (ACS)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Fushimi, Keiji; Hasegawa, Masumi; Ito, Takeru; Rockwell, Nathan C; Enomoto, Gen; -Win, Ni-Ni; Lagarias, John Clark; Ikeuchi, Masahiko; Narikawa, Rei Evolution-inspired design of multicolored photoswitches from a single cyanobacteriochrome scaffold Journal Article Proceedings of the National Academy of Sciences, 117 (27), pp. 15573–15580, 2020. Links | BibTeX @article{Fushimi_2020,
title = {Evolution-inspired design of multicolored photoswitches from a single cyanobacteriochrome scaffold},
author = {Keiji Fushimi and Masumi Hasegawa and Takeru Ito and Nathan C Rockwell and Gen Enomoto and Ni-Ni -Win and John Clark Lagarias and Masahiko Ikeuchi and Rei Narikawa},
url = {https://doi.org/10.1073%2Fpnas.2004273117},
doi = {10.1073/pnas.2004273117},
year = {2020},
date = {2020-06-01},
journal = {Proceedings of the National Academy of Sciences},
volume = {117},
number = {27},
pages = {15573--15580},
publisher = {Proceedings of the National Academy of Sciences},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Song, Ji-Young; Lee, Ha Yong; Yang, Hee Wook; Song, Ji-Joon; Lagarias, John Clark; Park, Youn-Il Spectral and photochemical diversity of tandem cysteine cyanobacterial phytochromes Journal Article Journal of Biological Chemistry, 295 (19), pp. 6754–6766, 2020. Links | BibTeX @article{Song_2020,
title = {Spectral and photochemical diversity of tandem cysteine cyanobacterial phytochromes},
author = {Ji-Young Song and Ha Yong Lee and Hee Wook Yang and Ji-Joon Song and John Clark Lagarias and Youn-Il Park},
url = {https://doi.org/10.1074%2Fjbc.ra120.012950},
doi = {10.1074/jbc.ra120.012950},
year = {2020},
date = {2020-05-01},
journal = {Journal of Biological Chemistry},
volume = {295},
number = {19},
pages = {6754--6766},
publisher = {Elsevier BV},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Hu, Wei; Lagarias, John Clark A one-tube method for rapid and reliable plant genomic DNA isolation for PCR analysis Journal Article 2020. Links | BibTeX @article{Hu_2020,
title = {A one-tube method for rapid and reliable plant genomic DNA isolation for PCR analysis},
author = {Wei Hu and John Clark Lagarias},
url = {https://doi.org/10.1101%2F2020.02.13.948455},
doi = {10.1101/2020.02.13.948455},
year = {2020},
date = {2020-02-01},
publisher = {Cold Spring Harbor Laboratory},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2019
|
Rockwell, Nathan C; Lagarias, John Clark Phytochrome evolution in 3D: deletion, duplication, and diversification Journal Article New Phytologist, 225 (6), pp. 2283–2300, 2019. Links | BibTeX @article{Rockwell_2019,
title = {Phytochrome evolution in 3D: deletion, duplication, and diversification},
author = {Nathan C Rockwell and John Clark Lagarias},
url = {https://doi.org/10.1111%2Fnph.16240},
doi = {10.1111/nph.16240},
year = {2019},
date = {2019-11-01},
journal = {New Phytologist},
volume = {225},
number = {6},
pages = {2283--2300},
publisher = {Wiley},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Hu, Wei; Lagarias, John Clark LOF and GOF Alleles Shed Light on the Molecular Basis of phyB Signaling in Plants Journal Article The Plant Cell, 31 (7), pp. 1400–1401, 2019. Links | BibTeX @article{Hu_2019,
title = {LOF and GOF Alleles Shed Light on the Molecular Basis of phyB Signaling in Plants},
author = {Wei Hu and John Clark Lagarias},
url = {https://doi.org/10.1105%2Ftpc.19.00373},
doi = {10.1105/tpc.19.00373},
year = {2019},
date = {2019-05-01},
journal = {The Plant Cell},
volume = {31},
number = {7},
pages = {1400--1401},
publisher = {American Society of Plant Biologists (ASPB)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kirpich, Julia S; Gottlieb, Sean M; Chang, Che-Wei; Kim, Peter W; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S Forward Photodynamics of the Noncanonical Red/Green NpR3784 Cyanobacteriochrome from $łess$i$greater$Nostoc punctiforme$łess$/i$greater$ Journal Article Biochemistry, 58 (18), pp. 2297–2306, 2019. Links | BibTeX @article{Kirpich_2019,
title = {Forward Photodynamics of the Noncanonical Red/Green NpR3784 Cyanobacteriochrome from $łess$i$greater$Nostoc punctiforme$łess$/i$greater$},
author = {Julia S Kirpich and Sean M Gottlieb and Che-Wei Chang and Peter W Kim and Shelley S Martin and John Clark Lagarias and Delmar S Larsen},
url = {https://doi.org/10.1021%2Facs.biochem.8b01274},
doi = {10.1021/acs.biochem.8b01274},
year = {2019},
date = {2019-04-01},
journal = {Biochemistry},
volume = {58},
number = {18},
pages = {2297--2306},
publisher = {American Chemical Society (ACS)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kirpich, Julia S; Gottlieb, Sean M; Chang, Che-Wei; Kim, Peter W; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S Reverse Photodynamics of the Noncanonical Red/Green NpR3784 Cyanobacteriochrome from Nostoc punctiforme Journal Article Biochemistry, 58 (18), pp. 2307–2317, 2019. Links | BibTeX @article{Kirpich_2019b,
title = {Reverse Photodynamics of the Noncanonical Red/Green NpR3784 Cyanobacteriochrome from Nostoc punctiforme},
author = {Julia S Kirpich and Sean M Gottlieb and Che-Wei Chang and Peter W Kim and Shelley S Martin and John Clark Lagarias and Delmar S Larsen},
url = {https://doi.org/10.1021%2Facs.biochem.8b01275},
doi = {10.1021/acs.biochem.8b01275},
year = {2019},
date = {2019-04-01},
journal = {Biochemistry},
volume = {58},
number = {18},
pages = {2307--2317},
publisher = {American Chemical Society (ACS)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Jenkins, Adam J; Gottlieb, Sean M; Chang, Che-Wei; Hayer, Randeep J; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S Conservation and diversity in the secondary forward photodynamics of red/green cyanobacteriochromes Journal Article Photochemical & Photobiological Sciences, 2019. Links | BibTeX @article{Jenkins_2019,
title = {Conservation and diversity in the secondary forward photodynamics of red/green cyanobacteriochromes},
author = {Adam J Jenkins and Sean M Gottlieb and Che-Wei Chang and Randeep J Hayer and Shelley S Martin and John Clark Lagarias and Delmar S Larsen},
url = {https://doi.org/10.1039%2Fc9pp00295b},
doi = {10.1039/c9pp00295b},
year = {2019},
date = {2019-01-01},
journal = {Photochemical & Photobiological Sciences},
publisher = {Royal Society of Chemistry (RSC)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2018
|
Yang, Yiling; Lam, Vinson; Adomako, Marie; Simkovsky, Ryan; Jakob, Annik; Rockwell, Nathan C; Cohen, Susan E; Taton, Arnaud; Wang, Jingtong; Lagarias, John Clark; Wilde, Annegret; Nobles, David R; Brand, Jerry J; Golden, Susan S Phototaxis in a wild isolate of the cyanobacterium
Synechococcus elongatus Journal Article Proceedings of the National Academy of Sciences, 115 (52), 2018. Links | BibTeX @article{Yang_2018,
title = {Phototaxis in a wild isolate of the cyanobacterium
Synechococcus elongatus},
author = {Yiling Yang and Vinson Lam and Marie Adomako and Ryan Simkovsky and Annik Jakob and Nathan C Rockwell and Susan E Cohen and Arnaud Taton and Jingtong Wang and John Clark Lagarias and Annegret Wilde and David R Nobles and Jerry J Brand and Susan S Golden},
url = {https://doi.org/10.1073%2Fpnas.1812871115},
doi = {10.1073/pnas.1812871115},
year = {2018},
date = {2018-12-01},
journal = {Proceedings of the National Academy of Sciences},
volume = {115},
number = {52},
publisher = {Proceedings of the National Academy of Sciences},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kirpich, Julia S; Mix, Tyler L; Martin, Shelley S; Rockwell, Nathan C; Lagarias, John Clark; Larsen, Delmar S Protonation Heterogeneity Modulates the Ultrafast Photocycle Initiation Dynamics of Phytochrome Cph1 Journal Article The Journal of Physical Chemistry Letters, 9 (12), pp. 3454–3462, 2018. Links | BibTeX @article{Kirpich_2018,
title = {Protonation Heterogeneity Modulates the Ultrafast Photocycle Initiation Dynamics of Phytochrome Cph1},
author = {Julia S Kirpich and Tyler L Mix and Shelley S Martin and Nathan C Rockwell and John Clark Lagarias and Delmar S Larsen},
url = {https://doi.org/10.1021%2Facs.jpclett.8b01133},
doi = {10.1021/acs.jpclett.8b01133},
year = {2018},
date = {2018-06-01},
journal = {The Journal of Physical Chemistry Letters},
volume = {9},
number = {12},
pages = {3454--3462},
publisher = {American Chemical Society (ACS)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kirpich, Julia S; Chang, Che-Wei; Madsen, Dorte; Gottlieb, Sean M; Martin, Shelley S; Rockwell, Nathan C; Lagarias, John Clark; Larsen, Delmar S Noncanonical Photodynamics of the Orange/Green Cyanobacteriochrome Power Sensor NpF2164g7 from the PtxD Phototaxis Regulator of Nostoc punctiforme Journal Article Biochemistry, 57 (18), pp. 2636–2648, 2018. Links | BibTeX @article{Kirpich_2018b,
title = {Noncanonical Photodynamics of the Orange/Green Cyanobacteriochrome Power Sensor NpF2164g7 from the PtxD Phototaxis Regulator of Nostoc punctiforme},
author = {Julia S Kirpich and Che-Wei Chang and Dorte Madsen and Sean M Gottlieb and Shelley S Martin and Nathan C Rockwell and John Clark Lagarias and Delmar S Larsen},
url = {https://doi.org/10.1021%2Facs.biochem.7b01252},
doi = {10.1021/acs.biochem.7b01252},
year = {2018},
date = {2018-04-01},
journal = {Biochemistry},
volume = {57},
number = {18},
pages = {2636--2648},
publisher = {American Chemical Society (ACS)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Lim, Sunghyuk; Yu, Qinhong; Gottlieb, Sean M; Chang, Che-Wei; Rockwell, Nathan C; Martin, Shelley S; Madsen, Dorte; Lagarias, John Clark; Larsen, Delmar S; Ames, James B Correlating structural and photochemical heterogeneity in cyanobacteriochrome NpR6012g4 Journal Article Proceedings of the National Academy of Sciences, 115 (17), pp. 4387–4392, 2018. Links | BibTeX @article{Lim_2018,
title = {Correlating structural and photochemical heterogeneity in cyanobacteriochrome NpR6012g4},
author = {Sunghyuk Lim and Qinhong Yu and Sean M Gottlieb and Che-Wei Chang and Nathan C Rockwell and Shelley S Martin and Dorte Madsen and John Clark Lagarias and Delmar S Larsen and James B Ames},
url = {https://doi.org/10.1073%2Fpnas.1720682115},
doi = {10.1073/pnas.1720682115},
year = {2018},
date = {2018-04-01},
journal = {Proceedings of the National Academy of Sciences},
volume = {115},
number = {17},
pages = {4387--4392},
publisher = {Proceedings of the National Academy of Sciences},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2017
|
Blain-Hartung, Matthew; Rockwell, Nathan C; Lagarias, John Clark Light-Regulated Synthesis of Cyclic-di-GMP by a Bidomain Construct of the Cyanobacteriochrome Tlr0924 (SesA) without Stable Dimerization Journal Article Biochemistry, 56 (46), pp. 6145–6154, 2017. Links | BibTeX @article{Blain_Hartung_2017,
title = {Light-Regulated Synthesis of Cyclic-di-GMP by a Bidomain Construct of the Cyanobacteriochrome Tlr0924 (SesA) without Stable Dimerization},
author = {Matthew Blain-Hartung and Nathan C Rockwell and John Clark Lagarias},
url = {https://doi.org/10.1021%2Facs.biochem.7b00734},
doi = {10.1021/acs.biochem.7b00734},
year = {2017},
date = {2017-11-01},
journal = {Biochemistry},
volume = {56},
number = {46},
pages = {6145--6154},
publisher = {American Chemical Society (ACS)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Duanmu, Deqiang; Rockwell, Nathan C; Lagarias, John Clark Algal light sensing and photoacclimation in aquatic environments Journal Article Plant, Cell & Environment, 40 (11), pp. 2558–2570, 2017. Links | BibTeX @article{Duanmu_2017,
title = {Algal light sensing and photoacclimation in aquatic environments},
author = {Deqiang Duanmu and Nathan C Rockwell and John Clark Lagarias},
url = {https://doi.org/10.1111%2Fpce.12943},
doi = {10.1111/pce.12943},
year = {2017},
date = {2017-05-01},
journal = {Plant, Cell & Environment},
volume = {40},
number = {11},
pages = {2558--2570},
publisher = {Wiley},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, Nathan C; Martin, Shelley S; Li, Fay-Wei; Mathews, Sarah; Lagarias, John Clark The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2 Journal Article New Phytologist, 214 (3), pp. 1145–1157, 2017. Links | BibTeX @article{Rockwell_2017,
title = {The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2},
author = {Nathan C Rockwell and Shelley S Martin and Fay-Wei Li and Sarah Mathews and John Clark Lagarias},
url = {https://doi.org/10.1111%2Fnph.14422},
doi = {10.1111/nph.14422},
year = {2017},
date = {2017-01-01},
journal = {New Phytologist},
volume = {214},
number = {3},
pages = {1145--1157},
publisher = {Wiley},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Baloban, Mikhail; Shcherbakova, Daria M; Pletnev, Sergei; Pletnev, Vladimir Z; Lagarias, John Clark; Verkhusha, Vladislav V Designing brighter near-infrared fluorescent proteins: insights from structural and biochemical studies Journal Article Chem. Sci., 8 (6), pp. 4546–4557, 2017. Links | BibTeX @article{Baloban_2017,
title = {Designing brighter near-infrared fluorescent proteins: insights from structural and biochemical studies},
author = {Mikhail Baloban and Daria M Shcherbakova and Sergei Pletnev and Vladimir Z Pletnev and John Clark Lagarias and Vladislav V Verkhusha},
url = {https://doi.org/10.1039%2Fc7sc00855d},
doi = {10.1039/c7sc00855d},
year = {2017},
date = {2017-01-01},
journal = {Chem. Sci.},
volume = {8},
number = {6},
pages = {4546--4557},
publisher = {Royal Society of Chemistry (RSC)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2016
|
Hu, Wei; Lagarias, John Clark A Tightly Regulated Genetic Selection System with Signaling-Active Alleles of Phytochrome B Journal Article Plant Physiology, 173 (1), pp. 366–375, 2016. Links | BibTeX @article{Hu_2016,
title = {A Tightly Regulated Genetic Selection System with Signaling-Active Alleles of Phytochrome B},
author = {Wei Hu and John Clark Lagarias},
url = {https://doi.org/10.1104%2Fpp.16.01345},
doi = {10.1104/pp.16.01345},
year = {2016},
date = {2016-11-01},
journal = {Plant Physiology},
volume = {173},
number = {1},
pages = {366--375},
publisher = {American Society of Plant Biologists (ASPB)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Lim, Sunghyuk; Yu, Qinhong; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Ames, James B H-1, C-13, and N-15 chemical shift assignments of cyanobacteriochrome NpR6012g4 in the green-absorbing photoproduct state Journal Article Biomolecular Nmr Assignments, 10 (1), pp. 157-161, 2016. BibTeX @article{RID:1020161734884-165,
title = {H-1, C-13, and N-15 chemical shift assignments of cyanobacteriochrome NpR6012g4 in the green-absorbing photoproduct state},
author = {Sunghyuk Lim and Qinhong Yu and Nathan C Rockwell and Shelley S Martin and John Clark Lagarias and James B Ames},
year = {2016},
date = {2016-01-01},
journal = {Biomolecular Nmr Assignments},
volume = {10},
number = {1},
pages = {157-161},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Yu, Qinhong; Lim, Sunghyuk; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Ames, James B H-1, N-15, and C-13 chemical shift assignments of cyanobacteriochrome NpR6012g4 in the red-absorbing dark state Journal Article Biomolecular Nmr Assignments, 10 (1), pp. 139-142, 2016. BibTeX @article{RID:1020161734885-164,
title = {H-1, N-15, and C-13 chemical shift assignments of cyanobacteriochrome NpR6012g4 in the red-absorbing dark state},
author = {Qinhong Yu and Sunghyuk Lim and Nathan C Rockwell and Shelley S Martin and John Clark Lagarias and James B Ames},
year = {2016},
date = {2016-01-01},
journal = {Biomolecular Nmr Assignments},
volume = {10},
number = {1},
pages = {139-142},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark Identification of Cyanobacteriochromes Detecting Far-Red Light Journal Article Biochemistry, 55 (28), pp. 3907-3919, 2016. BibTeX @article{RID:1020161734885-163,
title = {Identification of Cyanobacteriochromes Detecting Far-Red Light},
author = {Nathan C Rockwell and Shelley S Martin and John Clark Lagarias},
year = {2016},
date = {2016-01-01},
journal = {Biochemistry},
volume = {55},
number = {28},
pages = {3907-3919},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Chang, Che-Wei; Gottlieb, Sean M; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S Tracking the secondary photodynamics of the green/red cyanobacteriochrome RcaE from Fremyella diplosiphon Journal Article Chemical Physics Letters, 644 , pp. 225-230, 2016. BibTeX @article{RID:1020161734886-166,
title = {Tracking the secondary photodynamics of the green/red cyanobacteriochrome RcaE from Fremyella diplosiphon},
author = {Che-Wei Chang and Sean M Gottlieb and Nathan C Rockwell and Shelley S Martin and John Clark Lagarias and Delmar S Larsen},
year = {2016},
date = {2016-01-01},
journal = {Chemical Physics Letters},
volume = {644},
pages = {225-230},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2015
|
Lopez, O; Duanmu, D; Lagarias, JC; Fisher, AJ Crystal structure of heme oxygenase 2 from Chlamydomonas reinhardtii without heme. Miscellaneous 2015. BibTeX @misc{RID:1020161734886-169,
title = {Crystal structure of heme oxygenase 2 from Chlamydomonas reinhardtii without heme.},
author = {O Lopez and D Duanmu and JC Lagarias and AJ Fisher},
year = {2015},
date = {2015-12-01},
keywords = {},
pubstate = {published},
tppubtype = {misc}
}
|
Jones, Matthew Alan; Hu, Wei; Litthauer, Suzanne; Lagarias, John Clark; Harmer, Stacey Lynn A Constitutively Active Allele of Phytochrome B Maintains Circadian Robustness in the Absence of Light Journal Article Plant Physiology, 169 (1), pp. 814-+, 2015. BibTeX @article{RID:1023151717505-160,
title = {A Constitutively Active Allele of Phytochrome B Maintains Circadian Robustness in the Absence of Light},
author = {Matthew Alan Jones and Wei Hu and Suzanne Litthauer and John Clark Lagarias and Stacey Lynn Harmer},
year = {2015},
date = {2015-01-01},
journal = {Plant Physiology},
volume = {169},
number = {1},
pages = {814-+},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Hu, Wei; Su, Yi-Shin; Lagarias, John Clark A Light-Independent Allele of Phytochrome B Faithfully Recapitulates Photomorphogenic Transcriptional Networks (vol 2, pg 166, 2009) Journal Article Molecular Plant, 8 (3), pp. 493, 2015. BibTeX @article{RID:1020161734886-168,
title = {A Light-Independent Allele of Phytochrome B Faithfully Recapitulates Photomorphogenic Transcriptional Networks (vol 2, pg 166, 2009)},
author = {Wei Hu and Yi-Shin Su and John Clark Lagarias},
year = {2015},
date = {2015-01-01},
journal = {Molecular Plant},
volume = {8},
number = {3},
pages = {493},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, Nathan C; Martin, Shelley S; Lim, Sunghyuk; Lagarias, John Clark; Ames, James B Characterization of Red/Green Cyanobacteriochrome NpR6012g4 by Solution Nuclear Magnetic Resonance Spectroscopy: A Hydrophobic Pocket for the C15-E,anti Chromophore in the Photoproduct Journal Article Biochemistry, 54 (24), pp. 3772-3783, 2015. BibTeX @article{RID:1023151717505-162,
title = {Characterization of Red/Green Cyanobacteriochrome NpR6012g4 by Solution Nuclear Magnetic Resonance Spectroscopy: A Hydrophobic Pocket for the C15-E,anti Chromophore in the Photoproduct},
author = {Nathan C Rockwell and Shelley S Martin and Sunghyuk Lim and John Clark Lagarias and James B Ames},
year = {2015},
date = {2015-01-01},
journal = {Biochemistry},
volume = {54},
number = {24},
pages = {3772-3783},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, Nathan C; Martin, Shelley S; Lim, Sunghyuk; Lagarias, John Clark; Ames, James B Characterization of Red/Green Cyanobacteriochrome NpR6012g4 by Solution Nuclear Magnetic Resonance Spectroscopy: A Protonated Bilin Ring System in Both Photostates Journal Article Biochemistry, 54 (16), pp. 2581-2600, 2015. BibTeX @article{RID:1023151717506-157,
title = {Characterization of Red/Green Cyanobacteriochrome NpR6012g4 by Solution Nuclear Magnetic Resonance Spectroscopy: A Protonated Bilin Ring System in Both Photostates},
author = {Nathan C Rockwell and Shelley S Martin and Sunghyuk Lim and John Clark Lagarias and James B Ames},
year = {2015},
date = {2015-01-01},
journal = {Biochemistry},
volume = {54},
number = {16},
pages = {2581-2600},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Gottlieb, Sean M; Kim, Peter W; Chang, Che-Wei; Hanke, Samuel J; Hayer, Randeep J; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S Conservation and Diversity in the Primary Forward Photodynamics of Red/Green Cyanobacteriochromes Journal Article Biochemistry, 54 (4), pp. 1028-1042, 2015. BibTeX @article{RID:0619151849334-158,
title = {Conservation and Diversity in the Primary Forward Photodynamics of Red/Green Cyanobacteriochromes},
author = {Sean M Gottlieb and Peter W Kim and Che-Wei Chang and Samuel J Hanke and Randeep J Hayer and Nathan C Rockwell and Shelley S Martin and John Clark Lagarias and Delmar S Larsen},
year = {2015},
date = {2015-01-01},
journal = {Biochemistry},
volume = {54},
number = {4},
pages = {1028-1042},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, Nathan C; Duanmu, Deqiang; Martin, Shelley S; Bachy, Charles; Price, Dana C; Bhattacharya, Debashish; Worden, Alexandra Z; Lagarias, John Clark Eukaryotic algal phytochromes span the visible spectrum (vol 111, pg 3871, 2014) Journal Article Proceedings of the National Academy of Sciences of the United States of America, 112 (9), pp. E1051, 2015. BibTeX @article{RID:1020161734887-167,
title = {Eukaryotic algal phytochromes span the visible spectrum (vol 111, pg 3871, 2014)},
author = {Nathan C Rockwell and Deqiang Duanmu and Shelley S Martin and Charles Bachy and Dana C Price and Debashish Bhattacharya and Alexandra Z Worden and John Clark Lagarias},
year = {2015},
date = {2015-01-01},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
volume = {112},
number = {9},
pages = {E1051},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark Identification of DXCF cyanobacteriochrome lineages with predictable photocycles Journal Article Photochemical & Photobiological Sciences, 14 (5), pp. 929-941, 2015. BibTeX @article{RID:0619151849334-156,
title = {Identification of DXCF cyanobacteriochrome lineages with predictable photocycles},
author = {Nathan C Rockwell and Shelley S Martin and John Clark Lagarias},
year = {2015},
date = {2015-01-01},
journal = {Photochemical & Photobiological Sciences},
volume = {14},
number = {5},
pages = {929-941},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, Nathan C; Martin, Shelley S; Gan, Fei; Bryant, Donald A; Lagarias, John Clark NpR3784 is the prototype for a distinctive group of red/green cyanobacteriochromes using alternative Phe residues for photoproduct tuning Journal Article Photochemical & Photobiological Sciences, 14 (2), pp. 258-269, 2015. BibTeX @article{RID:0619151849335-159,
title = {NpR3784 is the prototype for a distinctive group of red/green cyanobacteriochromes using alternative Phe residues for photoproduct tuning},
author = {Nathan C Rockwell and Shelley S Martin and Fei Gan and Donald A Bryant and John Clark Lagarias},
year = {2015},
date = {2015-01-01},
journal = {Photochemical & Photobiological Sciences},
volume = {14},
number = {2},
pages = {258-269},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Berlin, Shai; Carroll, Elizabeth C; Newman, Zachary L; Okada, Hitomi O; Quinn, Carson M; Kallman, Benjamin; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Isacoff, Ehud Y Photoactivatable genetically encoded calcium indicators for targeted neuronal imaging Journal Article Nature Methods, 12 (9), pp. 852-+, 2015. BibTeX @article{RID:1023151720725-161,
title = {Photoactivatable genetically encoded calcium indicators for targeted neuronal imaging},
author = {Shai Berlin and Elizabeth C Carroll and Zachary L Newman and Hitomi O Okada and Carson M Quinn and Benjamin Kallman and Nathan C Rockwell and Shelley S Martin and John Clark Lagarias and Ehud Y Isacoff},
year = {2015},
date = {2015-01-01},
journal = {Nature Methods},
volume = {12},
number = {9},
pages = {852-+},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2014
|
Rockwell, Nathan C; Martin, Shelley S; Gulevich, Alexander G; Lagarias, John Clark Conserved Phenylalanine Residues Are Required for Blue-Shifting of Cyanobacteriochrome Photoproducts Journal Article Biochemistry, 53 (19), pp. 3118-3130, 2014. BibTeX @article{RID:0820141112359-147,
title = {Conserved Phenylalanine Residues Are Required for Blue-Shifting of Cyanobacteriochrome Photoproducts},
author = {Nathan C Rockwell and Shelley S Martin and Alexander G Gulevich and John Clark Lagarias},
year = {2014},
date = {2014-01-01},
journal = {Biochemistry},
volume = {53},
number = {19},
pages = {3118-3130},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kim, Peter W; Rockwell, Nathan C; Martin, Shelley S; Lagarias, Clark J; Larsen, Delmar S Dynamic inhomogeneity in the photodynamics of cyanobacterial phytochrome cph1. Journal Article Biochemistry, 53 (17), pp. 2818-26, 2014. BibTeX @article{RID:052914124026-143,
title = {Dynamic inhomogeneity in the photodynamics of cyanobacterial phytochrome cph1.},
author = {Peter W Kim and Nathan C Rockwell and Shelley S Martin and Clark J Lagarias and Delmar S Larsen},
year = {2014},
date = {2014-01-01},
journal = {Biochemistry},
volume = {53},
number = {17},
pages = {2818-26},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, Nathan C; Duanmu, Deqiang; Martin, Shelley S; Bachy, Charles; Price, Dana C; Bhattacharya, Debashish; Worden, Alexandra Z; Lagarias, John Clark Eukaryotic algal phytochromes span the visible spectrum Journal Article Proceedings of the National Academy of Sciences of the United States of America, 111 (10), pp. 3871-3876, 2014. BibTeX @article{RID:052914124026-145,
title = {Eukaryotic algal phytochromes span the visible spectrum},
author = {Nathan C Rockwell and Deqiang Duanmu and Shelley S Martin and Charles Bachy and Dana C Price and Debashish Bhattacharya and Alexandra Z Worden and John Clark Lagarias},
year = {2014},
date = {2014-01-01},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
volume = {111},
number = {10},
pages = {3871-3876},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Gan, Fei; Zhang, Shuyi; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Bryant, Donald A Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light Journal Article Science, 345 (6202), pp. 1312-1317, 2014. BibTeX @article{RID:0105151700995-155,
title = {Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light},
author = {Fei Gan and Shuyi Zhang and Nathan C Rockwell and Shelley S Martin and John Clark Lagarias and Donald A Bryant},
year = {2014},
date = {2014-01-01},
journal = {Science},
volume = {345},
number = {6202},
pages = {1312-1317},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Lim, Sunghyuk; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Ames, James B H-1, N-15, and C-13 chemical shift assignments of cyanobacteriochrome NpF2164g3 in the photoproduct state Journal Article Biomolecular Nmr Assignments, 8 (2), pp. 259-262, 2014. BibTeX @article{RID:0105151700995-154,
title = {H-1, N-15, and C-13 chemical shift assignments of cyanobacteriochrome NpF2164g3 in the photoproduct state},
author = {Sunghyuk Lim and Nathan C Rockwell and Shelley S Martin and John Clark Lagarias and James B Ames},
year = {2014},
date = {2014-01-01},
journal = {Biomolecular Nmr Assignments},
volume = {8},
number = {2},
pages = {259-262},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kim, Peter W; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S Heterogeneous Photodynamics of the P-fr State in the Cyanobacteriai Phytochrome Cph1 Journal Article Biochemistry, 53 (28), pp. 4601-4611, 2014. BibTeX @article{RID:0820141112359-149,
title = {Heterogeneous Photodynamics of the P-fr State in the Cyanobacteriai Phytochrome Cph1},
author = {Peter W Kim and Nathan C Rockwell and Shelley S Martin and John Clark Lagarias and Delmar S Larsen},
year = {2014},
date = {2014-01-01},
journal = {Biochemistry},
volume = {53},
number = {28},
pages = {4601-4611},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Duanmu, Deqiang; Bachy, Charles; Sudek, Sebastian; Wong, Chee-Hong; Jimenez, Valeria; Rockwell, Nathan C; Martin, Shelley S; Ngan, Chew Yee; Reistetter, Emily N; van Baren, Marijke J; Price, Dana C; Wei, Chia-Lin; Reyes-Prieto, Adrian; Lagarias, John Clark; Worden, Alexandra Z Marine algae and land plants share conserved phytochrome signaling systems Journal Article Proceedings of the National Academy of Sciences of the United States of America, 111 (44), pp. 15827-15832, 2014. BibTeX @article{RID:0105151700995-153,
title = {Marine algae and land plants share conserved phytochrome signaling systems},
author = {Deqiang Duanmu and Charles Bachy and Sebastian Sudek and Chee-Hong Wong and Valeria Jimenez and Nathan C Rockwell and Shelley S Martin and Chew Yee Ngan and Emily N Reistetter and Marijke J van Baren and Dana C Price and Chia-Lin Wei and Adrian Reyes-Prieto and John Clark Lagarias and Alexandra Z Worden},
year = {2014},
date = {2014-01-01},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
volume = {111},
number = {44},
pages = {15827-15832},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Gottlieb, Sean M; Chang, Che-Wei; Martin, Shelley S; Rockwell, Nathan C; Lagarias, John Clark; Larsen, Delmar S Optically Guided Photoactivity: Coordinating Tautomerization, Photoisomerization, Inhomogeneity, and Reactive Intermediates within the RcaE Cyanobacteriochrome Journal Article Journal of Physical Chemistry Letters, 5 (9), pp. 1527-1533, 2014. BibTeX @article{RID:052914124026-144,
title = {Optically Guided Photoactivity: Coordinating Tautomerization, Photoisomerization, Inhomogeneity, and Reactive Intermediates within the RcaE Cyanobacteriochrome},
author = {Sean M Gottlieb and Che-Wei Chang and Shelley S Martin and Nathan C Rockwell and John Clark Lagarias and Delmar S Larsen},
year = {2014},
date = {2014-01-01},
journal = {Journal of Physical Chemistry Letters},
volume = {5},
number = {9},
pages = {1527-1533},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Chen, Andrew; Li, Chengxia; Hu, Wei; Lau, Mei Yee; Lin, Huiqiong; Rockwell, Nathan C; Martin, Shelley S; Jernstedt, Judith A; Lagarias, John Clark; Dubcovsky, Jorge PHYTOCHROME C plays a major role in the acceleration of wheat flowering under long-day photoperiod Journal Article Proceedings of the National Academy of Sciences of the United States of America, 111 (28), pp. 10037-10044, 2014. BibTeX @article{RID:0820141112359-150,
title = {PHYTOCHROME C plays a major role in the acceleration of wheat flowering under long-day photoperiod},
author = {Andrew Chen and Chengxia Li and Wei Hu and Mei Yee Lau and Huiqiong Lin and Nathan C Rockwell and Shelley S Martin and Judith A Jernstedt and John Clark Lagarias and Jorge Dubcovsky},
year = {2014},
date = {2014-01-01},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
volume = {111},
number = {28},
pages = {10037-10044},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Lim, Sunghyuk; Rockwell, Nathan C; Martin, Shelley S; Dallas, Jerry L; Lagarias, John Clark; Ames, James B Photoconversion changes bilin chromophore conjugation and protein secondary structure in the violet/orange cyanobacteriochrome NpF2163g3 Journal Article Photochemical & Photobiological Sciences, 13 (6), pp. 951-962, 2014. BibTeX @article{RID:0820141112360-146,
title = {Photoconversion changes bilin chromophore conjugation and protein secondary structure in the violet/orange cyanobacteriochrome NpF2163g3},
author = {Sunghyuk Lim and Nathan C Rockwell and Shelley S Martin and Jerry L Dallas and John Clark Lagarias and James B Ames},
year = {2014},
date = {2014-01-01},
journal = {Photochemical & Photobiological Sciences},
volume = {13},
number = {6},
pages = {951-962},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
