163 entries « 1 of 4 »

2021

Blain-Hartung, Matthew; Rockwell, Nathan C; Lagarias, John Clark

Natural diversity provides a broad spectrum of cyanobacteriochrome-based diguanylate cyclases Journal Article

Plant Physiology, 187 (2), pp. 632–645, 2021.

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Bandara, Sepalika; Rockwell, Nathan C; Zeng, Xiaoli; Ren, Zhong; Wang, Cong; Shin, Heewhan; Martin, Shelley S; Moreno, Marcus V; Lagarias, John Clark; Yang, Xiaojing

Crystal structure of a far-red–sensing cyanobacteriochrome reveals an atypical bilin conformation and spectral tuning mechanism Journal Article

Proceedings of the National Academy of Sciences, 118 (12), pp. e2025094118, 2021.

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Kirpich, Julia S; Chang, Che-Wei; Franse, Jasper; Yu, Qinhong; Escobar, Francisco Velazquez; Jenkins, Adam J; Martin, Shelley S; Narikawa, Rei; Ames, James B; Lagarias, John Clark; Larsen, Delmar S

Comparison of the Forward and Reverse Photocycle Dynamics of Two Highly Similar Canonical Red/Green Cyanobacteriochromes Reveals Unexpected Differences Journal Article

Biochemistry, 60 (4), pp. 274–288, 2021.

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2020

Moreno, Marcus V; Rockwell, Nathan C; Mora, Manuel; Fisher, Andrew J; Lagarias, John Clark

A far-red cyanobacteriochrome lineage specific for verdins Journal Article

Proceedings of the National Academy of Sciences, 117 (45), pp. 27962–27970, 2020.

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Jenkins, Adam J; Gottlieb, Sean Marc; Chang, Che-Wei; Kim, Peter W; Hayer, Randeep J; Hanke, Samuel J; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S

Conservation and Diversity in the Primary Reverse Photodynamics of the Canonical Red/Green Cyanobacteriochrome Family Journal Article

Biochemistry, 59 (41), pp. 4015–4028, 2020.

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Fushimi, Keiji; Hasegawa, Masumi; Ito, Takeru; Rockwell, Nathan C; Enomoto, Gen; -Win, Ni-Ni; Lagarias, John Clark; Ikeuchi, Masahiko; Narikawa, Rei

Evolution-inspired design of multicolored photoswitches from a single cyanobacteriochrome scaffold Journal Article

Proceedings of the National Academy of Sciences, 117 (27), pp. 15573–15580, 2020.

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Song, Ji-Young; Lee, Ha Yong; Yang, Hee Wook; Song, Ji-Joon; Lagarias, John Clark; Park, Youn-Il

Spectral and photochemical diversity of tandem cysteine cyanobacterial phytochromes Journal Article

Journal of Biological Chemistry, 295 (19), pp. 6754–6766, 2020.

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Hu, Wei; Lagarias, John Clark

A one-tube method for rapid and reliable plant genomic DNA isolation for PCR analysis Journal Article

2020.

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2019

Rockwell, Nathan C; Lagarias, John Clark

Phytochrome evolution in 3D: deletion, duplication, and diversification Journal Article

New Phytologist, 225 (6), pp. 2283–2300, 2019.

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Hu, Wei; Lagarias, John Clark

LOF and GOF Alleles Shed Light on the Molecular Basis of phyB Signaling in Plants Journal Article

The Plant Cell, 31 (7), pp. 1400–1401, 2019.

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Kirpich, Julia S; Gottlieb, Sean M; Chang, Che-Wei; Kim, Peter W; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S

Reverse Photodynamics of the Noncanonical Red/Green NpR3784 Cyanobacteriochrome from Nostoc punctiforme Journal Article

Biochemistry, 58 (18), pp. 2307–2317, 2019.

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Lagarias, John Clark; Kirpich, Julia S; Gottlieb, Sean M; Chang, Che-Wei; Kim, Peter W; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S

Forward Photodynamics of the Noncanonical Red/Green NpR3784 Cyanobacteriochrome from Nostoc punctiforme Journal Article

Biochemistry, 2019.

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Jenkins, Adam J; Gottlieb, Sean M; Chang, Che-Wei; Hayer, Randeep J; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S

Conservation and diversity in the secondary forward photodynamics of red/green cyanobacteriochromes Journal Article

Photochemical & Photobiological Sciences, 2019.

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2018

Yang, Yiling; Lam, Vinson; Adomako, Marie; Simkovsky, Ryan; Jakob, Annik; Rockwell, Nathan C; Cohen, Susan E; Taton, Arnaud; Wang, Jingtong; Lagarias, John Clark; Wilde, Annegret; Nobles, David R; Brand, Jerry J; Golden, Susan S

Phototaxis in a wild isolate of the cyanobacterium Synechococcus elongatus Journal Article

Proceedings of the National Academy of Sciences, 115 (52), 2018.

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Kirpich, Julia S; Mix, Tyler L; Martin, Shelley S; Rockwell, Nathan C; Lagarias, John Clark; Larsen, Delmar S

Protonation Heterogeneity Modulates the Ultrafast Photocycle Initiation Dynamics of Phytochrome Cph1 Journal Article

The Journal of Physical Chemistry Letters, 9 (12), pp. 3454–3462, 2018.

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Kirpich, Julia S; Chang, Che-Wei; Madsen, Dorte; Gottlieb, Sean M; Martin, Shelley S; Rockwell, Nathan C; Lagarias, John Clark; Larsen, Delmar S

Noncanonical Photodynamics of the Orange/Green Cyanobacteriochrome Power Sensor NpF2164g7 from the PtxD Phototaxis Regulator of Nostoc punctiforme Journal Article

Biochemistry, 57 (18), pp. 2636–2648, 2018.

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Lim, Sunghyuk; Yu, Qinhong; Gottlieb, Sean M; Chang, Che-Wei; Rockwell, Nathan C; Martin, Shelley S; Madsen, Dorte; Lagarias, John Clark; Larsen, Delmar S; Ames, James B

Correlating structural and photochemical heterogeneity in cyanobacteriochrome NpR6012g4 Journal Article

Proceedings of the National Academy of Sciences, 115 (17), pp. 4387–4392, 2018.

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2017

Blain-Hartung, Matthew; Rockwell, Nathan C; Lagarias, John Clark

Light-Regulated Synthesis of Cyclic-di-GMP by a Bidomain Construct of the Cyanobacteriochrome Tlr0924 (SesA) without Stable Dimerization Journal Article

Biochemistry, 56 (46), pp. 6145–6154, 2017.

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Duanmu, Deqiang; Rockwell, Nathan C; Lagarias, John Clark

Algal light sensing and photoacclimation in aquatic environments Journal Article

Plant, Cell & Environment, 40 (11), pp. 2558–2570, 2017.

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Rockwell, Nathan C; Martin, Shelley S; Li, Fay-Wei; Mathews, Sarah; Lagarias, John Clark

The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2 Journal Article

New Phytologist, 214 (3), pp. 1145–1157, 2017.

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Baloban, Mikhail; Shcherbakova, Daria M; Pletnev, Sergei; Pletnev, Vladimir Z; Lagarias, John Clark; Verkhusha, Vladislav V

Designing brighter near-infrared fluorescent proteins: insights from structural and biochemical studies Journal Article

Chem. Sci., 8 (6), pp. 4546–4557, 2017.

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2016

Hu, Wei; Lagarias, John Clark

A Tightly Regulated Genetic Selection System with Signaling-Active Alleles of Phytochrome B Journal Article

Plant Physiology, 173 (1), pp. 366–375, 2016.

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Lim, Sunghyuk; Yu, Qinhong; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Ames, James B

H-1, C-13, and N-15 chemical shift assignments of cyanobacteriochrome NpR6012g4 in the green-absorbing photoproduct state Journal Article

Biomolecular Nmr Assignments, 10 (1), pp. 157-161, 2016.

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Yu, Qinhong; Lim, Sunghyuk; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Ames, James B

H-1, N-15, and C-13 chemical shift assignments of cyanobacteriochrome NpR6012g4 in the red-absorbing dark state Journal Article

Biomolecular Nmr Assignments, 10 (1), pp. 139-142, 2016.

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Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark

Identification of Cyanobacteriochromes Detecting Far-Red Light Journal Article

Biochemistry, 55 (28), pp. 3907-3919, 2016.

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Chang, Che-Wei; Gottlieb, Sean M; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S

Tracking the secondary photodynamics of the green/red cyanobacteriochrome RcaE from Fremyella diplosiphon Journal Article

Chemical Physics Letters, 644 , pp. 225-230, 2016.

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2015

Lopez, O; Duanmu, D; Lagarias, JC; Fisher, AJ

Crystal structure of heme oxygenase 2 from Chlamydomonas reinhardtii without heme. Miscellaneous

2015.

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Jones, Matthew Alan; Hu, Wei; Litthauer, Suzanne; Lagarias, John Clark; Harmer, Stacey Lynn

A Constitutively Active Allele of Phytochrome B Maintains Circadian Robustness in the Absence of Light Journal Article

Plant Physiology, 169 (1), pp. 814-+, 2015.

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Hu, Wei; Su, Yi-Shin; Lagarias, John Clark

A Light-Independent Allele of Phytochrome B Faithfully Recapitulates Photomorphogenic Transcriptional Networks (vol 2, pg 166, 2009) Journal Article

Molecular Plant, 8 (3), pp. 493, 2015.

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Rockwell, Nathan C; Martin, Shelley S; Lim, Sunghyuk; Lagarias, John Clark; Ames, James B

Characterization of Red/Green Cyanobacteriochrome NpR6012g4 by Solution Nuclear Magnetic Resonance Spectroscopy: A Hydrophobic Pocket for the C15-E,anti Chromophore in the Photoproduct Journal Article

Biochemistry, 54 (24), pp. 3772-3783, 2015.

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Rockwell, Nathan C; Martin, Shelley S; Lim, Sunghyuk; Lagarias, John Clark; Ames, James B

Characterization of Red/Green Cyanobacteriochrome NpR6012g4 by Solution Nuclear Magnetic Resonance Spectroscopy: A Protonated Bilin Ring System in Both Photostates Journal Article

Biochemistry, 54 (16), pp. 2581-2600, 2015.

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Gottlieb, Sean M; Kim, Peter W; Chang, Che-Wei; Hanke, Samuel J; Hayer, Randeep J; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S

Conservation and Diversity in the Primary Forward Photodynamics of Red/Green Cyanobacteriochromes Journal Article

Biochemistry, 54 (4), pp. 1028-1042, 2015.

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Rockwell, Nathan C; Duanmu, Deqiang; Martin, Shelley S; Bachy, Charles; Price, Dana C; Bhattacharya, Debashish; Worden, Alexandra Z; Lagarias, John Clark

Eukaryotic algal phytochromes span the visible spectrum (vol 111, pg 3871, 2014) Journal Article

Proceedings of the National Academy of Sciences of the United States of America, 112 (9), pp. E1051, 2015.

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Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark

Identification of DXCF cyanobacteriochrome lineages with predictable photocycles Journal Article

Photochemical & Photobiological Sciences, 14 (5), pp. 929-941, 2015.

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Rockwell, Nathan C; Martin, Shelley S; Gan, Fei; Bryant, Donald A; Lagarias, John Clark

NpR3784 is the prototype for a distinctive group of red/green cyanobacteriochromes using alternative Phe residues for photoproduct tuning Journal Article

Photochemical & Photobiological Sciences, 14 (2), pp. 258-269, 2015.

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Berlin, Shai; Carroll, Elizabeth C; Newman, Zachary L; Okada, Hitomi O; Quinn, Carson M; Kallman, Benjamin; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Isacoff, Ehud Y

Photoactivatable genetically encoded calcium indicators for targeted neuronal imaging Journal Article

Nature Methods, 12 (9), pp. 852-+, 2015.

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2014

Rockwell, Nathan C; Martin, Shelley S; Gulevich, Alexander G; Lagarias, John Clark

Conserved Phenylalanine Residues Are Required for Blue-Shifting of Cyanobacteriochrome Photoproducts Journal Article

Biochemistry, 53 (19), pp. 3118-3130, 2014.

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Kim, Peter W; Rockwell, Nathan C; Martin, Shelley S; Lagarias, Clark J; Larsen, Delmar S

Dynamic inhomogeneity in the photodynamics of cyanobacterial phytochrome cph1. Journal Article

Biochemistry, 53 (17), pp. 2818-26, 2014.

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Rockwell, Nathan C; Duanmu, Deqiang; Martin, Shelley S; Bachy, Charles; Price, Dana C; Bhattacharya, Debashish; Worden, Alexandra Z; Lagarias, John Clark

Eukaryotic algal phytochromes span the visible spectrum Journal Article

Proceedings of the National Academy of Sciences of the United States of America, 111 (10), pp. 3871-3876, 2014.

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Gan, Fei; Zhang, Shuyi; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Bryant, Donald A

Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light Journal Article

Science, 345 (6202), pp. 1312-1317, 2014.

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Lim, Sunghyuk; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Ames, James B

H-1, N-15, and C-13 chemical shift assignments of cyanobacteriochrome NpF2164g3 in the photoproduct state Journal Article

Biomolecular Nmr Assignments, 8 (2), pp. 259-262, 2014.

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Kim, Peter W; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S

Heterogeneous Photodynamics of the P-fr State in the Cyanobacteriai Phytochrome Cph1 Journal Article

Biochemistry, 53 (28), pp. 4601-4611, 2014.

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Duanmu, Deqiang; Bachy, Charles; Sudek, Sebastian; Wong, Chee-Hong; Jimenez, Valeria; Rockwell, Nathan C; Martin, Shelley S; Ngan, Chew Yee; Reistetter, Emily N; van Baren, Marijke J; Price, Dana C; Wei, Chia-Lin; Reyes-Prieto, Adrian; Lagarias, John Clark; Worden, Alexandra Z

Marine algae and land plants share conserved phytochrome signaling systems Journal Article

Proceedings of the National Academy of Sciences of the United States of America, 111 (44), pp. 15827-15832, 2014.

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Gottlieb, Sean M; Chang, Che-Wei; Martin, Shelley S; Rockwell, Nathan C; Lagarias, John Clark; Larsen, Delmar S

Optically Guided Photoactivity: Coordinating Tautomerization, Photoisomerization, Inhomogeneity, and Reactive Intermediates within the RcaE Cyanobacteriochrome Journal Article

Journal of Physical Chemistry Letters, 5 (9), pp. 1527-1533, 2014.

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Chen, Andrew; Li, Chengxia; Hu, Wei; Lau, Mei Yee; Lin, Huiqiong; Rockwell, Nathan C; Martin, Shelley S; Jernstedt, Judith A; Lagarias, John Clark; Dubcovsky, Jorge

PHYTOCHROME C plays a major role in the acceleration of wheat flowering under long-day photoperiod Journal Article

Proceedings of the National Academy of Sciences of the United States of America, 111 (28), pp. 10037-10044, 2014.

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Lim, Sunghyuk; Rockwell, Nathan C; Martin, Shelley S; Dallas, Jerry L; Lagarias, John Clark; Ames, James B

Photoconversion changes bilin chromophore conjugation and protein secondary structure in the violet/orange cyanobacteriochrome NpF2163g3 Journal Article

Photochemical & Photobiological Sciences, 13 (6), pp. 951-962, 2014.

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Lim, Sunghyuk; Rockwell, Nathan C; Martin, Shelley S; Dallas, Jerry L; Lagarias, John Clark; Ames, James B

Photoconversion changes bilin chromophore conjugation and protein secondary structure in the violet/orange cyanobacteriochrome NpF2163g3 (vol 13, pg 951, 2014) Journal Article

Photochemical & Photobiological Sciences, 13 (9), pp. 1360, 2014.

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Gottlieb, Sean M; Kim, Peter W; Corley, Scott C; Madsen, Dorte; Hanke, Samuel J; Chang, Che-Wei; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S

Primary and Secondary Photodynamics of the Violet/Orange Dual-Cysteine NpF2164g3 Cyanobacteriochrome Domain from Nostoc punctiforme Journal Article

Biochemistry, 53 (6), pp. 1029-1040, 2014.

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2013

Hirose, Y; Rockwell, N C; Nishiyama, K; Narikawa, R; Ukaji, Y; Inomata, K; Lagarias, J C; Ikeuchi, M

Green/red cyanobacteriochromes regulate complementary chromatic acclimation via a protochromic photocycle Journal Article

Proceedings of the National Academy of Sciences of the United States of America, 110 (13), pp. 4974-4979, 2013.

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Kabasakal, B V; Gae, D D; Li, J; Lagarias, J C; Koehl, P; Fisher, A J

His74 conservation in the bilin reductase PcyA family reflects an important role in protein-substrate structure and dynamics Journal Article

Archives of Biochemistry and Biophysics, 537 (2), pp. 233-242, 2013.

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163 entries « 1 of 4 »