2025
|
Rockwell, Nathan C; Lagarias, John Clark Circular dichroism spectroscopy reveals multiple phytochrome photoproducts in equilibrium Journal Article In: Photochemical & Photobiological Sciences, 2025, ISSN: 1474-9092. @article{Rockwell_2025,
title = {Circular dichroism spectroscopy reveals multiple phytochrome photoproducts in equilibrium},
author = {Nathan C Rockwell and John Clark Lagarias},
url = {http://dx.doi.org/10.1007/s43630-025-00763-2},
doi = {10.1007/s43630-025-00763-2},
issn = {1474-9092},
year = {2025},
date = {2025-01-01},
journal = {Photochemical & Photobiological Sciences},
publisher = {Springer Science and Business Media LLC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Fan, De; Hu, Wei; Xu, Nan; Seto, Ethan R; Lagarias, John Clark; Chen, Xuemei; Chen, Meng A multisensor high-temperature signaling framework for triggering daytime thermomorphogenesis in Arabidopsis Journal Article In: Nature Communications, vol. 16, no. 1, 2025, ISSN: 2041-1723. @article{Fan_2025b,
title = {A multisensor high-temperature signaling framework for triggering daytime thermomorphogenesis in Arabidopsis},
author = {De Fan and Wei Hu and Nan Xu and Ethan R Seto and John Clark Lagarias and Xuemei Chen and Meng Chen},
url = {http://dx.doi.org/10.1038/s41467-025-60498-7},
doi = {10.1038/s41467-025-60498-7},
issn = {2041-1723},
year = {2025},
date = {2025-01-01},
journal = {Nature Communications},
volume = {16},
number = {1},
publisher = {Springer Science and Business Media LLC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Yang, Hee Wook; Song, Ji-Young; Song, Ji-Joon; Kim, Young Won; Rockwell, Nathan C; Kim, Woojin; Kim, Hyunsoo; Lagarias, John Clark; Park, Youn-Il Dual-Cys bacteriophytochromes: intermediates in cyanobacterial phytochrome evolution? Journal Article In: The FEBS Journal, vol. 292, no. 5, pp. 1197?1216, 2025, ISSN: 1742-4658. @article{Yang_2025b,
title = {Dual-Cys bacteriophytochromes: intermediates in cyanobacterial phytochrome evolution?},
author = {Hee Wook Yang and Ji-Young Song and Ji-Joon Song and Young Won Kim and Nathan C Rockwell and Woojin Kim and Hyunsoo Kim and John Clark Lagarias and Youn-Il Park},
url = {http://dx.doi.org/10.1111/febs.17395},
doi = {10.1111/febs.17395},
issn = {1742-4658},
year = {2025},
date = {2025-01-01},
journal = {The FEBS Journal},
volume = {292},
number = {5},
pages = {1197?1216},
publisher = {Wiley},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2024
|
Rockwell, Nathan C; Lagarias, John Clark Cyanobacteriochromes: A Rainbow of Photoreceptors Journal Article In: Annual Review of Microbiology, 2024, ISSN: 1545-3251. @article{Rockwell_2024,
title = {Cyanobacteriochromes: A Rainbow of Photoreceptors},
author = {Nathan C Rockwell and John Clark Lagarias},
url = {http://dx.doi.org/10.1146/annurev-micro-041522-094613},
doi = {10.1146/annurev-micro-041522-094613},
issn = {1545-3251},
year = {2024},
date = {2024-06-01},
journal = {Annual Review of Microbiology},
publisher = {Annual Reviews},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Eckardt, Nancy A; Bock, Ralph; Croce, Roberta; Lagarias, John Clark; Merchant, Sabeeha S; Redding, Kevin Focus on photosynthesis Journal Article In: The Plant Cell, vol. 36, no. 10, pp. 3895?3896, 2024, ISSN: 1532-298X. @article{Eckardt_2024,
title = {Focus on photosynthesis},
author = {Nancy A Eckardt and Ralph Bock and Roberta Croce and John Clark Lagarias and Sabeeha S Merchant and Kevin Redding},
url = {http://dx.doi.org/10.1093/plcell/koae204},
doi = {10.1093/plcell/koae204},
issn = {1532-298X},
year = {2024},
date = {2024-01-01},
journal = {The Plant Cell},
volume = {36},
number = {10},
pages = {3895?3896},
publisher = {Oxford University Press (OUP)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Hu, Wei; Lagarias, John Clark A cytosol-tethered YHB variant of phytochrome B retains photomorphogenic signaling activity Journal Article In: Plant Molecular Biology, vol. 114, no. 4, 2024, ISSN: 1573-5028. @article{Hu_2024,
title = {A cytosol-tethered YHB variant of phytochrome B retains photomorphogenic signaling activity},
author = {Wei Hu and John Clark Lagarias},
url = {http://dx.doi.org/10.1007/s11103-024-01469-2},
doi = {10.1007/s11103-024-01469-2},
issn = {1573-5028},
year = {2024},
date = {2024-01-01},
journal = {Plant Molecular Biology},
volume = {114},
number = {4},
publisher = {Springer Science and Business Media LLC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, Nathan C; Lagarias, John Clark Cyanobacteriochromes from Gloeobacterales provide new insight into the diversification of cyanobacterial photoreceptors Journal Article In: Journal of Molecular Biology, vol. 436, no. 5, pp. 168313, 2024, ISSN: 0022-2836. @article{Rockwell_2024b,
title = {Cyanobacteriochromes from Gloeobacterales provide new insight into the diversification of cyanobacterial photoreceptors},
author = {Nathan C Rockwell and John Clark Lagarias},
url = {http://dx.doi.org/10.1016/j.jmb.2023.168313},
doi = {10.1016/j.jmb.2023.168313},
issn = {0022-2836},
year = {2024},
date = {2024-01-01},
journal = {Journal of Molecular Biology},
volume = {436},
number = {5},
pages = {168313},
publisher = {Elsevier BV},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2023
|
Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark Elucidating the origins of phycocyanobilin biosynthesis and phycobiliproteins Journal Article In: Proceedings of the National Academy of Sciences, vol. 120, no. 17, 2023, ISSN: 1091-6490. @article{Rockwell_2023d,
title = {Elucidating the origins of phycocyanobilin biosynthesis and phycobiliproteins},
author = {Nathan C Rockwell and Shelley S Martin and John Clark Lagarias},
url = {http://dx.doi.org/10.1073/pnas.2300770120},
doi = {10.1073/pnas.2300770120},
issn = {1091-6490},
year = {2023},
date = {2023-04-01},
journal = {Proceedings of the National Academy of Sciences},
volume = {120},
number = {17},
publisher = {Proceedings of the National Academy of Sciences},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Larsen, Bo; Hofmann, Roberto; Camacho, Ines S; Clarke, Richard W; Lagarias, John Clark; Jones, Alex R; Jones, Alexander M Highlighter: An optogenetic system for high-resolution gene expression control in plants Journal Article In: PLOS Biology, vol. 21, no. 9, pp. e3002303, 2023, ISSN: 1545-7885. @article{Larsen_2023,
title = {Highlighter: An optogenetic system for high-resolution gene expression control in plants},
author = {Bo Larsen and Roberto Hofmann and Ines S Camacho and Richard W Clarke and John Clark Lagarias and Alex R Jones and Alexander M Jones},
editor = {Mark Estelle},
url = {http://dx.doi.org/10.1371/journal.pbio.3002303},
doi = {10.1371/journal.pbio.3002303},
issn = {1545-7885},
year = {2023},
date = {2023-01-01},
journal = {PLOS Biology},
volume = {21},
number = {9},
pages = {e3002303},
publisher = {Public Library of Science (PLoS)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, Nathan C; Lagarias, John Clark GUN4 appeared early in cyanobacterial evolution Journal Article In: PNAS Nexus, vol. 2, no. 5, 2023, ISSN: 2752-6542. @article{Rockwell_2023c,
title = {GUN4 appeared early in cyanobacterial evolution},
author = {Nathan C Rockwell and John Clark Lagarias},
editor = {Edward Bayer},
url = {http://dx.doi.org/10.1093/pnasnexus/pgad131},
doi = {10.1093/pnasnexus/pgad131},
issn = {2752-6542},
year = {2023},
date = {2023-01-01},
journal = {PNAS Nexus},
volume = {2},
number = {5},
publisher = {Oxford University Press (OUP)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Willows, Robert D; Lagarias, John Clark; Duanmu, Deqiang Tetrapyrrole biosynthesis and signaling (chlorophyll, heme, and bilins) Book Section In: The Chlamydomonas Sourcebook, pp. 691–731, Elsevier, 2023. @incollection{Willows_2023,
title = {Tetrapyrrole biosynthesis and signaling (chlorophyll, heme, and bilins)},
author = {Robert D Willows and John Clark Lagarias and Deqiang Duanmu},
url = {https://doi.org/10.1016%2Fb978-0-12-821430-5.00021-3},
doi = {10.1016/b978-0-12-821430-5.00021-3},
year = {2023},
date = {2023-01-01},
booktitle = {The Chlamydomonas Sourcebook},
pages = {691--731},
publisher = {Elsevier},
keywords = {},
pubstate = {published},
tppubtype = {incollection}
}
|
2022
|
Rockwell, Nathan C; Moreno, Marcus V; Martin, Shelley S; Lagarias, John Clark Protein–chromophore interactions controlling photoisomerization in red/green cyanobacteriochromes Journal Article In: Photochemical & Photobiological Sciences, vol. 21, no. 4, pp. 471–491, 2022. @article{Rockwell_2022b,
title = {Protein–chromophore interactions controlling photoisomerization in red/green cyanobacteriochromes},
author = {Nathan C Rockwell and Marcus V Moreno and Shelley S Martin and John Clark Lagarias},
url = {https://doi.org/10.1007%2Fs43630-022-00213-3},
doi = {10.1007/s43630-022-00213-3},
year = {2022},
date = {2022-04-01},
journal = {Photochemical & Photobiological Sciences},
volume = {21},
number = {4},
pages = {471--491},
publisher = {Springer Science and Business Media LLC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2021
|
Blain-Hartung, Matthew; Rockwell, Nathan C; Lagarias, John Clark Natural diversity provides a broad spectrum of cyanobacteriochrome-based diguanylate cyclases Journal Article In: Plant Physiology, vol. 187, no. 2, pp. 632–645, 2021. @article{Blain_Hartung_2021b,
title = {Natural diversity provides a broad spectrum of cyanobacteriochrome-based diguanylate cyclases},
author = {Matthew Blain-Hartung and Nathan C Rockwell and John Clark Lagarias},
url = {https://doi.org/10.1093%2Fplphys%2Fkiab240},
doi = {10.1093/plphys/kiab240},
year = {2021},
date = {2021-05-01},
journal = {Plant Physiology},
volume = {187},
number = {2},
pages = {632--645},
publisher = {Oxford University Press (OUP)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Zhang, Weiqing; Willows, Robert D; Deng, Rui; Li, Zheng; Li, Mengqi; Wang, Yan; Guo, Yunling; Shi, Weida; Fan, Qiuling; Martin, Shelley S; Rockwell, Nathan C; Lagarias, John Clark; Duanmu, Deqiang Bilin-dependent regulation of chlorophyll biosynthesis by GUN4 Journal Article In: Proceedings of the National Academy of Sciences, vol. 118, no. 20, 2021. @article{Zhang_2021b,
title = {Bilin-dependent regulation of chlorophyll biosynthesis by GUN4},
author = {Weiqing Zhang and Robert D Willows and Rui Deng and Zheng Li and Mengqi Li and Yan Wang and Yunling Guo and Weida Shi and Qiuling Fan and Shelley S Martin and Nathan C Rockwell and John Clark Lagarias and Deqiang Duanmu},
url = {https://doi.org/10.1073%2Fpnas.2104443118},
doi = {10.1073/pnas.2104443118},
year = {2021},
date = {2021-05-01},
journal = {Proceedings of the National Academy of Sciences},
volume = {118},
number = {20},
publisher = {Proceedings of the National Academy of Sciences},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Bandara, Sepalika; Rockwell, Nathan C; Zeng, Xiaoli; Ren, Zhong; Wang, Cong; Shin, Heewhan; Martin, Shelley S; Moreno, Marcus V; Lagarias, John Clark; Yang, Xiaojing Crystal structure of a far-red–sensing cyanobacteriochrome reveals an atypical bilin conformation and spectral tuning mechanism Journal Article In: Proceedings of the National Academy of Sciences, vol. 118, no. 12, 2021. @article{Bandara_2021b,
title = {Crystal structure of a far-red–sensing cyanobacteriochrome reveals an atypical bilin conformation and spectral tuning mechanism},
author = {Sepalika Bandara and Nathan C Rockwell and Xiaoli Zeng and Zhong Ren and Cong Wang and Heewhan Shin and Shelley S Martin and Marcus V Moreno and John Clark Lagarias and Xiaojing Yang},
url = {https://doi.org/10.1073%2Fpnas.2025094118},
doi = {10.1073/pnas.2025094118},
year = {2021},
date = {2021-03-01},
journal = {Proceedings of the National Academy of Sciences},
volume = {118},
number = {12},
publisher = {Proceedings of the National Academy of Sciences},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kirpich, Julia S; Chang, Che-Wei; Franse, Jasper; Yu, Qinhong; Escobar, Francisco Velazquez; Jenkins, Adam J; Martin, Shelley S; Narikawa, Rei; Ames, James B; Lagarias, John Clark; Larsen, Delmar S Comparison of the forward and reverse photocycle dynamics of two highly similar canonical red/green cyanobacteriochromes reveals unexpected differences Journal Article In: Biochemistry, vol. 60, no. 4, pp. 274–288, 2021. @article{Kirpich_2021b,
title = {Comparison of the forward and reverse photocycle dynamics of two highly similar canonical red/green cyanobacteriochromes reveals unexpected differences},
author = {Julia S Kirpich and Che-Wei Chang and Jasper Franse and Qinhong Yu and Francisco Velazquez Escobar and Adam J Jenkins and Shelley S Martin and Rei Narikawa and James B Ames and John Clark Lagarias and Delmar S Larsen},
url = {https://doi.org/10.1021%2Facs.biochem.0c00796},
doi = {10.1021/acs.biochem.0c00796},
year = {2021},
date = {2021-01-01},
journal = {Biochemistry},
volume = {60},
number = {4},
pages = {274--288},
publisher = {American Chemical Society (ACS)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2020
|
Moreno, Marcus V; Rockwell, Nathan C; Mora, Manuel; Fisher, Andrew J; Lagarias, John Clark A far-red cyanobacteriochrome lineage specific for verdins Journal Article In: Proceedings of the National Academy of Sciences, vol. 117, no. 45, pp. 27962–27970, 2020. @article{Moreno_2020b,
title = {A far-red cyanobacteriochrome lineage specific for verdins},
author = {Marcus V Moreno and Nathan C Rockwell and Manuel Mora and Andrew J Fisher and John Clark Lagarias},
url = {https://doi.org/10.1073%2Fpnas.2016047117},
doi = {10.1073/pnas.2016047117},
year = {2020},
date = {2020-10-01},
journal = {Proceedings of the National Academy of Sciences},
volume = {117},
number = {45},
pages = {27962--27970},
publisher = {Proceedings of the National Academy of Sciences},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Jenkins, Adam J; Gottlieb, Sean Marc; Chang, Che-Wei; Kim, Peter W; Hayer, Randeep J; Hanke, Samuel J; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S Conservation and diversity in the primary reverse photodynamics of the canonical red/green cyanobacteriochrome family Journal Article In: Biochemistry, vol. 59, no. 41, pp. 4015–4028, 2020. @article{Jenkins_2020b,
title = {Conservation and diversity in the primary reverse photodynamics of the canonical red/green cyanobacteriochrome family},
author = {Adam J Jenkins and Sean Marc Gottlieb and Che-Wei Chang and Peter W Kim and Randeep J Hayer and Samuel J Hanke and Shelley S Martin and John Clark Lagarias and Delmar S Larsen},
url = {https://doi.org/10.1021%2Facs.biochem.0c00454},
doi = {10.1021/acs.biochem.0c00454},
year = {2020},
date = {2020-10-01},
journal = {Biochemistry},
volume = {59},
number = {41},
pages = {4015--4028},
publisher = {American Chemical Society (ACS)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Fushimi, Keiji; Hasegawa, Masumi; Ito, Takeru; Rockwell, Nathan C; Enomoto, Gen; -Win, Ni-Ni; Lagarias, John Clark; Ikeuchi, Masahiko; Narikawa, Rei Evolution-inspired design of multicolored photoswitches from a single cyanobacteriochrome scaffold Journal Article In: Proceedings of the National Academy of Sciences, vol. 117, no. 27, pp. 15573–15580, 2020. @article{Fushimi_2020b,
title = {Evolution-inspired design of multicolored photoswitches from a single cyanobacteriochrome scaffold},
author = {Keiji Fushimi and Masumi Hasegawa and Takeru Ito and Nathan C Rockwell and Gen Enomoto and Ni-Ni -Win and John Clark Lagarias and Masahiko Ikeuchi and Rei Narikawa},
url = {https://doi.org/10.1073%2Fpnas.2004273117},
doi = {10.1073/pnas.2004273117},
year = {2020},
date = {2020-06-01},
journal = {Proceedings of the National Academy of Sciences},
volume = {117},
number = {27},
pages = {15573--15580},
publisher = {Proceedings of the National Academy of Sciences},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Song, Ji-Young; Lee, Ha Yong; Yang, Hee Wook; Song, Ji-Joon; Lagarias, John Clark; Park, Youn-Il Spectral and photochemical diversity of tandem cysteine cyanobacterial phytochromes Journal Article In: Journal of Biological Chemistry, vol. 295, no. 19, pp. 6754–6766, 2020. @article{Song_2020b,
title = {Spectral and photochemical diversity of tandem cysteine cyanobacterial phytochromes},
author = {Ji-Young Song and Ha Yong Lee and Hee Wook Yang and Ji-Joon Song and John Clark Lagarias and Youn-Il Park},
url = {https://doi.org/10.1074%2Fjbc.ra120.012950},
doi = {10.1074/jbc.ra120.012950},
year = {2020},
date = {2020-05-01},
journal = {Journal of Biological Chemistry},
volume = {295},
number = {19},
pages = {6754--6766},
publisher = {Elsevier BV},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Hu, Wei; Lagarias, John Clark A one-tube method for rapid and reliable plant genomic DNA isolation for PCR analysis Journal Article In: 2020. @article{Hu_2020b,
title = {A one-tube method for rapid and reliable plant genomic DNA isolation for PCR analysis},
author = {Wei Hu and John Clark Lagarias},
url = {https://doi.org/10.1101%2F2020.02.13.948455},
doi = {10.1101/2020.02.13.948455},
year = {2020},
date = {2020-02-01},
publisher = {Cold Spring Harbor Laboratory},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2019
|
Hu, Wei; Lagarias, John Clark LOF and GOF Alleles Shed Light on the Molecular Basis of phyB Signaling in Plants Journal Article In: The Plant Cell, vol. 31, no. 7, pp. 1400–1401, 2019. @article{Hu_2019b,
title = {LOF and GOF Alleles Shed Light on the Molecular Basis of phyB Signaling in Plants},
author = {Wei Hu and John Clark Lagarias},
url = {https://doi.org/10.1105%2Ftpc.19.00373},
doi = {10.1105/tpc.19.00373},
year = {2019},
date = {2019-05-01},
journal = {The Plant Cell},
volume = {31},
number = {7},
pages = {1400--1401},
publisher = {American Society of Plant Biologists (ASPB)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kirpich, Julia S; Gottlieb, Sean M; Chang, Che-Wei; Kim, Peter W; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S Forward photodynamics of the noncanonical red/green NpR3784 cyanobacteriochrome from Nostoc punctiforme Journal Article In: Biochemistry, vol. 58, no. 18, pp. 2297-2306, 2019, ISSN: 1520-4995. @article{Kirpich_2019c,
title = {Forward photodynamics of the noncanonical red/green NpR3784 cyanobacteriochrome from Nostoc punctiforme},
author = {Julia S Kirpich and Sean M Gottlieb and Che-Wei Chang and Peter W Kim and Shelley S Martin and John Clark Lagarias and Delmar S Larsen},
url = {http://dx.doi.org/10.1021/acs.biochem.8b01274},
doi = {10.1021/acs.biochem.8b01274},
issn = {1520-4995},
year = {2019},
date = {2019-04-01},
journal = {Biochemistry},
volume = {58},
number = {18},
pages = {2297-2306},
publisher = {American Chemical Society (ACS)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kirpich, Julia S; Gottlieb, Sean M; Chang, Che-Wei; Kim, Peter W; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S Reverse photodynamics of the noncanonical red/green NpR3784 cyanobacteriochrome from Nostoc punctiforme Journal Article In: Biochemistry, vol. 58, no. 18, pp. 2307-2317, 2019. @article{Kirpich_2019d,
title = {Reverse photodynamics of the noncanonical red/green NpR3784 cyanobacteriochrome from Nostoc punctiforme},
author = {Julia S Kirpich and Sean M Gottlieb and Che-Wei Chang and Peter W Kim and Shelley S Martin and John Clark Lagarias and Delmar S Larsen},
url = {https://doi.org/10.1021%2Facs.biochem.8b01275},
doi = {10.1021/acs.biochem.8b01275},
year = {2019},
date = {2019-04-01},
journal = {Biochemistry},
volume = {58},
number = {18},
pages = {2307-2317},
publisher = {American Chemical Society (ACS)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, Nathan C; Lagarias, John Clark Phytochrome evolution in 3D: deletion, duplication, and diversification Journal Article In: New Phytologist, vol. 225, no. 6, pp. 2283-2300, 2019, ISSN: 1469-8137. @article{Rockwell_2019b,
title = {Phytochrome evolution in 3D: deletion, duplication, and diversification},
author = {Nathan C Rockwell and John Clark Lagarias},
url = {http://dx.doi.org/10.1111/nph.16240},
doi = {10.1111/nph.16240},
issn = {1469-8137},
year = {2019},
date = {2019-01-01},
journal = {New Phytologist},
volume = {225},
number = {6},
pages = {2283-2300},
publisher = {Wiley},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Jenkins, Adam J; Gottlieb, Sean M; Chang, Che-Wei; Hayer, Randeep J; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S Conservation and diversity in the secondary forward photodynamics of red/green cyanobacteriochromes Journal Article In: Photochemical & Photobiological Sciences, 2019. @article{Jenkins_2019b,
title = {Conservation and diversity in the secondary forward photodynamics of red/green cyanobacteriochromes},
author = {Adam J Jenkins and Sean M Gottlieb and Che-Wei Chang and Randeep J Hayer and Shelley S Martin and John Clark Lagarias and Delmar S Larsen},
url = {https://doi.org/10.1039%2Fc9pp00295b},
doi = {10.1039/c9pp00295b},
year = {2019},
date = {2019-01-01},
journal = {Photochemical & Photobiological Sciences},
publisher = {Royal Society of Chemistry (RSC)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2018
|
Yang, Yiling; Lam, Vinson; Adomako, Marie; Simkovsky, Ryan; Jakob, Annik; Rockwell, Nathan C; Cohen, Susan E; Taton, Arnaud; Wang, Jingtong; Lagarias, John Clark; Wilde, Annegret; Nobles, David R; Brand, Jerry J; Golden, Susan S Phototaxis in a wild isolate of the cyanobacterium
Synechococcus elongatus Journal Article In: Proceedings of the National Academy of Sciences, vol. 115, no. 52, 2018. @article{Yang_2018b,
title = {Phototaxis in a wild isolate of the cyanobacterium
Synechococcus elongatus},
author = {Yiling Yang and Vinson Lam and Marie Adomako and Ryan Simkovsky and Annik Jakob and Nathan C Rockwell and Susan E Cohen and Arnaud Taton and Jingtong Wang and John Clark Lagarias and Annegret Wilde and David R Nobles and Jerry J Brand and Susan S Golden},
url = {https://doi.org/10.1073%2Fpnas.1812871115},
doi = {10.1073/pnas.1812871115},
year = {2018},
date = {2018-12-01},
journal = {Proceedings of the National Academy of Sciences},
volume = {115},
number = {52},
publisher = {Proceedings of the National Academy of Sciences},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kirpich, Julia S; Mix, Tyler L; Martin, Shelley S; Rockwell, Nathan C; Lagarias, John Clark; Larsen, Delmar S Protonation heterogeneity modulates the ultrafast photocycle initiation dynamics of phytochrome Cph1 Journal Article In: The Journal of Physical Chemistry Letters, vol. 9, no. 12, pp. 3454–3462, 2018. @article{Kirpich_2018c,
title = {Protonation heterogeneity modulates the ultrafast photocycle initiation dynamics of phytochrome Cph1},
author = {Julia S Kirpich and Tyler L Mix and Shelley S Martin and Nathan C Rockwell and John Clark Lagarias and Delmar S Larsen},
url = {https://doi.org/10.1021%2Facs.jpclett.8b01133},
doi = {10.1021/acs.jpclett.8b01133},
year = {2018},
date = {2018-06-01},
journal = {The Journal of Physical Chemistry Letters},
volume = {9},
number = {12},
pages = {3454--3462},
publisher = {American Chemical Society (ACS)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kirpich, Julia S; Chang, Che-Wei; Madsen, Dorte; Gottlieb, Sean M; Martin, Shelley S; Rockwell, Nathan C; Lagarias, John Clark; Larsen, Delmar S Noncanonical photodynamics of the orange/green cyanobacteriochrome power sensor NpF2164g7 from the PtxD phototaxis regulator of Nostoc punctiforme Journal Article In: Biochemistry, vol. 57, no. 18, pp. 2636–2648, 2018. @article{Kirpich_2018d,
title = {Noncanonical photodynamics of the orange/green cyanobacteriochrome power sensor NpF2164g7 from the PtxD phototaxis regulator of Nostoc punctiforme},
author = {Julia S Kirpich and Che-Wei Chang and Dorte Madsen and Sean M Gottlieb and Shelley S Martin and Nathan C Rockwell and John Clark Lagarias and Delmar S Larsen},
url = {https://doi.org/10.1021%2Facs.biochem.7b01252},
doi = {10.1021/acs.biochem.7b01252},
year = {2018},
date = {2018-04-01},
journal = {Biochemistry},
volume = {57},
number = {18},
pages = {2636--2648},
publisher = {American Chemical Society (ACS)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Lim, Sunghyuk; Yu, Qinhong; Gottlieb, Sean M; Chang, Che-Wei; Rockwell, Nathan C; Martin, Shelley S; Madsen, Dorte; Lagarias, John Clark; Larsen, Delmar S; Ames, James B Correlating structural and photochemical heterogeneity in cyanobacteriochrome NpR6012g4 Journal Article In: Proceedings of the National Academy of Sciences, vol. 115, no. 17, pp. 4387–4392, 2018. @article{Lim_2018b,
title = {Correlating structural and photochemical heterogeneity in cyanobacteriochrome NpR6012g4},
author = {Sunghyuk Lim and Qinhong Yu and Sean M Gottlieb and Che-Wei Chang and Nathan C Rockwell and Shelley S Martin and Dorte Madsen and John Clark Lagarias and Delmar S Larsen and James B Ames},
url = {https://doi.org/10.1073%2Fpnas.1720682115},
doi = {10.1073/pnas.1720682115},
year = {2018},
date = {2018-04-01},
journal = {Proceedings of the National Academy of Sciences},
volume = {115},
number = {17},
pages = {4387--4392},
publisher = {Proceedings of the National Academy of Sciences},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2017
|
Blain-Hartung, Matthew; Rockwell, Nathan C; Lagarias, John Clark Light-regulated synthesis of cyclic-di-GMP by a bidomain construct of the cyanobacteriochrome Tlr0924 (SesA) without stable dimerization Journal Article In: Biochemistry, vol. 56, no. 46, pp. 6145–6154, 2017. @article{Blain_Hartung_2017b,
title = {Light-regulated synthesis of cyclic-di-GMP by a bidomain construct of the cyanobacteriochrome Tlr0924 (SesA) without stable dimerization},
author = {Matthew Blain-Hartung and Nathan C Rockwell and John Clark Lagarias},
url = {https://doi.org/10.1021%2Facs.biochem.7b00734},
doi = {10.1021/acs.biochem.7b00734},
year = {2017},
date = {2017-11-01},
journal = {Biochemistry},
volume = {56},
number = {46},
pages = {6145--6154},
publisher = {American Chemical Society (ACS)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Duanmu, Deqiang; Rockwell, Nathan C; Lagarias, John Clark Algal light sensing and photoacclimation in aquatic environments Journal Article In: Plant, Cell & Environment, vol. 40, no. 11, pp. 2558-2570, 2017, ISSN: 1365-3040. @article{Duanmu_2017b,
title = {Algal light sensing and photoacclimation in aquatic environments},
author = {Deqiang Duanmu and Nathan C Rockwell and John Clark Lagarias},
url = {http://dx.doi.org/10.1111/pce.12943},
doi = {10.1111/pce.12943},
issn = {1365-3040},
year = {2017},
date = {2017-01-01},
journal = {Plant, Cell & Environment},
volume = {40},
number = {11},
pages = {2558-2570},
publisher = {Wiley},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, Nathan C; Martin, Shelley S; Li, Fay-Wei; Mathews, Sarah; Lagarias, John Clark The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2 Journal Article In: New Phytologist, vol. 214, no. 3, pp. 1145–1157, 2017. @article{Rockwell_2017b,
title = {The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2},
author = {Nathan C Rockwell and Shelley S Martin and Fay-Wei Li and Sarah Mathews and John Clark Lagarias},
url = {https://doi.org/10.1111%2Fnph.14422},
doi = {10.1111/nph.14422},
year = {2017},
date = {2017-01-01},
journal = {New Phytologist},
volume = {214},
number = {3},
pages = {1145--1157},
publisher = {Wiley},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Baloban, Mikhail; Shcherbakova, Daria M; Pletnev, Sergei; Pletnev, Vladimir Z; Lagarias, John Clark; Verkhusha, Vladislav V Designing brighter near-infrared fluorescent proteins: insights from structural and biochemical studies Journal Article In: Chemical Science, vol. 8, no. 6, pp. 4546–4557, 2017. @article{Baloban_2017b,
title = {Designing brighter near-infrared fluorescent proteins: insights from structural and biochemical studies},
author = {Mikhail Baloban and Daria M Shcherbakova and Sergei Pletnev and Vladimir Z Pletnev and John Clark Lagarias and Vladislav V Verkhusha},
url = {https://doi.org/10.1039%2Fc7sc00855d},
doi = {10.1039/c7sc00855d},
year = {2017},
date = {2017-01-01},
journal = {Chemical Science},
volume = {8},
number = {6},
pages = {4546--4557},
publisher = {Royal Society of Chemistry (RSC)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2016
|
Hu, Wei; Lagarias, John Clark A tightly regulated genetic selection system with signaling-active alleles of phytochrome B Journal Article In: Plant Physiology, vol. 173, no. 1, pp. 366–375, 2016. @article{Hu_2016b,
title = {A tightly regulated genetic selection system with signaling-active alleles of phytochrome B},
author = {Wei Hu and John Clark Lagarias},
url = {https://doi.org/10.1104%2Fpp.16.01345},
doi = {10.1104/pp.16.01345},
year = {2016},
date = {2016-11-01},
journal = {Plant Physiology},
volume = {173},
number = {1},
pages = {366--375},
publisher = {American Society of Plant Biologists (ASPB)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Lim, Sunghyuk; Yu, Qinhong; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Ames, James B H-1, C-13, and N-15 chemical shift assignments of cyanobacteriochrome NpR6012g4 in the green-absorbing photoproduct state Journal Article In: Biomolecular NMR Assignments, vol. 10, no. 1, pp. 157-161, 2016. @article{RID:1020161734884-165b,
title = {H-1, C-13, and N-15 chemical shift assignments of cyanobacteriochrome NpR6012g4 in the green-absorbing photoproduct state},
author = {Sunghyuk Lim and Qinhong Yu and Nathan C Rockwell and Shelley S Martin and John Clark Lagarias and James B Ames},
year = {2016},
date = {2016-01-01},
journal = {Biomolecular NMR Assignments},
volume = {10},
number = {1},
pages = {157-161},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Yu, Qinhong; Lim, Sunghyuk; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Ames, James B H-1, N-15, and C-13 chemical shift assignments of cyanobacteriochrome NpR6012g4 in the red-absorbing dark state Journal Article In: Biomolecular NMR Assignments, vol. 10, no. 1, pp. 139-142, 2016. @article{RID:1020161734885-164b,
title = {H-1, N-15, and C-13 chemical shift assignments of cyanobacteriochrome NpR6012g4 in the red-absorbing dark state},
author = {Qinhong Yu and Sunghyuk Lim and Nathan C Rockwell and Shelley S Martin and John Clark Lagarias and James B Ames},
year = {2016},
date = {2016-01-01},
journal = {Biomolecular NMR Assignments},
volume = {10},
number = {1},
pages = {139-142},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark Identification of cyanobacteriochromes detecting far-red light Journal Article In: Biochemistry, vol. 55, no. 28, pp. 3907-3919, 2016. @article{RID:1020161734885-163b,
title = {Identification of cyanobacteriochromes detecting far-red light},
author = {Nathan C Rockwell and Shelley S Martin and John Clark Lagarias},
year = {2016},
date = {2016-01-01},
journal = {Biochemistry},
volume = {55},
number = {28},
pages = {3907-3919},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Chang, Che-Wei; Gottlieb, Sean M; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S Tracking the secondary photodynamics of the green/red cyanobacteriochrome RcaE from Fremyella diplosiphon Journal Article In: Chemical Physics Letters, vol. 644, pp. 225-230, 2016. @article{RID:1020161734886-166b,
title = {Tracking the secondary photodynamics of the green/red cyanobacteriochrome RcaE from Fremyella diplosiphon},
author = {Che-Wei Chang and Sean M Gottlieb and Nathan C Rockwell and Shelley S Martin and John Clark Lagarias and Delmar S Larsen},
year = {2016},
date = {2016-01-01},
journal = {Chemical Physics Letters},
volume = {644},
pages = {225-230},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2015
|
Jones, Matthew Alan; Hu, Wei; Litthauer, Suzanne; Lagarias, John Clark; Harmer, Stacey Lynn A constitutively active allele of phytochrome B maintains circadian robustness in the absence of light Journal Article In: Plant Physiology, vol. 169, no. 1, pp. 814-+, 2015. @article{RID:1023151717505-160b,
title = {A constitutively active allele of phytochrome B maintains circadian robustness in the absence of light},
author = {Matthew Alan Jones and Wei Hu and Suzanne Litthauer and John Clark Lagarias and Stacey Lynn Harmer},
year = {2015},
date = {2015-01-01},
journal = {Plant Physiology},
volume = {169},
number = {1},
pages = {814-+},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Hu, Wei; Su, Yi-Shin; Lagarias, John Clark A Light-Independent Allele of Phytochrome B Faithfully Recapitulates Photomorphogenic Transcriptional Networks (vol 2, pg 166, 2009) Journal Article In: Molecular Plant, vol. 8, no. 3, pp. 493, 2015. @article{RID:1020161734886-168b,
title = {A Light-Independent Allele of Phytochrome B Faithfully Recapitulates Photomorphogenic Transcriptional Networks (vol 2, pg 166, 2009)},
author = {Wei Hu and Yi-Shin Su and John Clark Lagarias},
year = {2015},
date = {2015-01-01},
journal = {Molecular Plant},
volume = {8},
number = {3},
pages = {493},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, Nathan C; Martin, Shelley S; Lim, Sunghyuk; Lagarias, John Clark; Ames, James B Characterization of red/green cyanobacteriochrome NpR6012g4 by solution nuclear magnetic resonance spectroscopy: A hydrophobic pocket for the C15-E,anti chromophore in the photoproduct Journal Article In: Biochemistry, vol. 54, no. 24, pp. 3772-3783, 2015. @article{RID:1023151717505-162b,
title = {Characterization of red/green cyanobacteriochrome NpR6012g4 by solution nuclear magnetic resonance spectroscopy: A hydrophobic pocket for the C15-E,anti chromophore in the photoproduct},
author = {Nathan C Rockwell and Shelley S Martin and Sunghyuk Lim and John Clark Lagarias and James B Ames},
year = {2015},
date = {2015-01-01},
journal = {Biochemistry},
volume = {54},
number = {24},
pages = {3772-3783},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, Nathan C; Martin, Shelley S; Lim, Sunghyuk; Lagarias, John Clark; Ames, James B Characterization of red/green cyanobacteriochrome NpR6012g4 by solution nuclear magnetic resonance spectroscopy: A protonated bilin ring system in both photostates Journal Article In: Biochemistry, vol. 54, no. 16, pp. 2581-2600, 2015. @article{RID:1023151717506-157b,
title = {Characterization of red/green cyanobacteriochrome NpR6012g4 by solution nuclear magnetic resonance spectroscopy: A protonated bilin ring system in both photostates},
author = {Nathan C Rockwell and Shelley S Martin and Sunghyuk Lim and John Clark Lagarias and James B Ames},
year = {2015},
date = {2015-01-01},
journal = {Biochemistry},
volume = {54},
number = {16},
pages = {2581-2600},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Gottlieb, Sean M; Kim, Peter W; Chang, Che-Wei; Hanke, Samuel J; Hayer, Randeep J; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S Conservation and diversity in the primary forward photodynamics of red/green cyanobacteriochromes Journal Article In: Biochemistry, vol. 54, no. 4, pp. 1028-1042, 2015. @article{RID:0619151849334-158b,
title = {Conservation and diversity in the primary forward photodynamics of red/green cyanobacteriochromes},
author = {Sean M Gottlieb and Peter W Kim and Che-Wei Chang and Samuel J Hanke and Randeep J Hayer and Nathan C Rockwell and Shelley S Martin and John Clark Lagarias and Delmar S Larsen},
year = {2015},
date = {2015-01-01},
journal = {Biochemistry},
volume = {54},
number = {4},
pages = {1028-1042},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, Nathan C; Duanmu, Deqiang; Martin, Shelley S; Bachy, Charles; Price, Dana C; Bhattacharya, Debashish; Worden, Alexandra Z; Lagarias, John Clark Eukaryotic algal phytochromes span the visible spectrum (vol 111, pg 3871, 2014) Journal Article In: Proceedings of the National Academy of Sciences of the United States of America, vol. 112, no. 9, pp. E1051, 2015. @article{RID:1020161734887-167b,
title = {Eukaryotic algal phytochromes span the visible spectrum (vol 111, pg 3871, 2014)},
author = {Nathan C Rockwell and Deqiang Duanmu and Shelley S Martin and Charles Bachy and Dana C Price and Debashish Bhattacharya and Alexandra Z Worden and John Clark Lagarias},
year = {2015},
date = {2015-01-01},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
volume = {112},
number = {9},
pages = {E1051},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark Identification of DXCF cyanobacteriochrome lineages with predictable photocycles Journal Article In: Photochemical & Photobiological Sciences, vol. 14, no. 5, pp. 929-941, 2015. @article{RID:0619151849334-156b,
title = {Identification of DXCF cyanobacteriochrome lineages with predictable photocycles},
author = {Nathan C Rockwell and Shelley S Martin and John Clark Lagarias},
year = {2015},
date = {2015-01-01},
journal = {Photochemical & Photobiological Sciences},
volume = {14},
number = {5},
pages = {929-941},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Rockwell, Nathan C; Martin, Shelley S; Gan, Fei; Bryant, Donald A; Lagarias, John Clark NpR3784 is the prototype for a distinctive group of red/green cyanobacteriochromes using alternative Phe residues for photoproduct tuning Journal Article In: Photochemical & Photobiological Sciences, vol. 14, no. 2, pp. 258-269, 2015. @article{RID:0619151849335-159b,
title = {NpR3784 is the prototype for a distinctive group of red/green cyanobacteriochromes using alternative Phe residues for photoproduct tuning},
author = {Nathan C Rockwell and Shelley S Martin and Fei Gan and Donald A Bryant and John Clark Lagarias},
year = {2015},
date = {2015-01-01},
journal = {Photochemical & Photobiological Sciences},
volume = {14},
number = {2},
pages = {258-269},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Berlin, Shai; Carroll, Elizabeth C; Newman, Zachary L; Okada, Hitomi O; Quinn, Carson M; Kallman, Benjamin; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Isacoff, Ehud Y Photoactivatable genetically encoded calcium indicators for targeted neuronal imaging Journal Article In: Nature Methods, vol. 12, no. 9, pp. 852-+, 2015. @article{RID:1023151720725-161b,
title = {Photoactivatable genetically encoded calcium indicators for targeted neuronal imaging},
author = {Shai Berlin and Elizabeth C Carroll and Zachary L Newman and Hitomi O Okada and Carson M Quinn and Benjamin Kallman and Nathan C Rockwell and Shelley S Martin and John Clark Lagarias and Ehud Y Isacoff},
year = {2015},
date = {2015-01-01},
journal = {Nature Methods},
volume = {12},
number = {9},
pages = {852-+},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2014
|
Rockwell, Nathan C; Martin, Shelley S; Gulevich, Alexander G; Lagarias, John Clark Conserved Phenylalanine Residues Are Required for Blue-Shifting of Cyanobacteriochrome Photoproducts Journal Article In: Biochemistry, vol. 53, no. 19, pp. 3118-3130, 2014. @article{RID:0820141112359-147b,
title = {Conserved Phenylalanine Residues Are Required for Blue-Shifting of Cyanobacteriochrome Photoproducts},
author = {Nathan C Rockwell and Shelley S Martin and Alexander G Gulevich and John Clark Lagarias},
year = {2014},
date = {2014-01-01},
journal = {Biochemistry},
volume = {53},
number = {19},
pages = {3118-3130},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kim, Peter W; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S Dynamic inhomogeneity in the photodynamics of cyanobacterial phytochrome cph1. Journal Article In: Biochemistry, vol. 53, no. 17, pp. 2818-26, 2014. @article{RID:052914124026-143b,
title = {Dynamic inhomogeneity in the photodynamics of cyanobacterial phytochrome cph1.},
author = {Peter W Kim and Nathan C Rockwell and Shelley S Martin and John Clark Lagarias and Delmar S Larsen},
year = {2014},
date = {2014-01-01},
journal = {Biochemistry},
volume = {53},
number = {17},
pages = {2818-26},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
