169 entries « 1 of 4 »

2023

Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark

Elucidating the origins of phycocyanobilin biosynthesis and phycobiliproteins Journal Article

Proceedings of the National Academy of Sciences, 120 (17), 2023, ISSN: 1091-6490.

Links | BibTeX

Rockwell, Nathan C; Lagarias, John Clark

Cyanobacteriochromes from gloeobacterales provide new insight into the diversification of cyanobacterial photoreceptors Journal Article

Journal of Molecular Biology, pp. 168313, 2023, ISSN: 0022-2836.

Links | BibTeX

Larsen, Bo; Hofmann, Roberto; Camacho, Ines S; Clarke, Richard W; Lagarias, John Clark; Jones, Alex R; Jones, Alexander M

Highlighter: An optogenetic system for high-resolution gene expression control in plants Journal Article

PLOS Biology, 21 (9), pp. e3002303, 2023, ISSN: 1545-7885.

Links | BibTeX

Rockwell, Nathan C; Lagarias, John Clark

GUN4 appeared early in cyanobacterial evolution Journal Article

PNAS Nexus, 2 (5), 2023, ISSN: 2752-6542.

Links | BibTeX

Willows, Robert D; Lagarias, John Clark; Duanmu, Deqiang

Tetrapyrrole biosynthesis and signaling (chlorophyll, heme, and bilins) Incollection

The Chlamydomonas Sourcebook, pp. 691–731, Elsevier, 2023.

Links | BibTeX

2022

Rockwell, Nathan C; Moreno, Marcus V; Martin, Shelley S; Lagarias, John Clark

Protein–chromophore interactions controlling photoisomerization in red/green cyanobacteriochromes Journal Article

Photochemical & Photobiological Sciences, 21 (4), pp. 471–491, 2022.

Links | BibTeX

2021

Blain-Hartung, Matthew; Rockwell, Nathan C; Lagarias, John Clark

Natural diversity provides a broad spectrum of cyanobacteriochrome-based diguanylate cyclases Journal Article

Plant Physiology, 187 (2), pp. 632–645, 2021.

Links | BibTeX

Zhang, Weiqing; Willows, Robert D; Deng, Rui; Li, Zheng; Li, Mengqi; Wang, Yan; Guo, Yunling; Shi, Weida; Fan, Qiuling; Martin, Shelley S; Rockwell, Nathan C; Lagarias, John Clark; Duanmu, Deqiang

Bilin-dependent regulation of chlorophyll biosynthesis by GUN4 Journal Article

Proceedings of the National Academy of Sciences, 118 (20), 2021.

Links | BibTeX

Bandara, Sepalika; Rockwell, Nathan C; Zeng, Xiaoli; Ren, Zhong; Wang, Cong; Shin, Heewhan; Martin, Shelley S; Moreno, Marcus V; Lagarias, John Clark; Yang, Xiaojing

Crystal structure of a far-red–sensing cyanobacteriochrome reveals an atypical bilin conformation and spectral tuning mechanism Journal Article

Proceedings of the National Academy of Sciences, 118 (12), 2021.

Links | BibTeX

Kirpich, Julia S; Chang, Che-Wei; Franse, Jasper; Yu, Qinhong; Escobar, Francisco Velazquez; Jenkins, Adam J; Martin, Shelley S; Narikawa, Rei; Ames, James B; Lagarias, John Clark; Larsen, Delmar S

Comparison of the forward and reverse photocycle dynamics of two highly similar canonical red/green cyanobacteriochromes reveals unexpected differences Journal Article

Biochemistry, 60 (4), pp. 274–288, 2021.

Links | BibTeX

2020

Moreno, Marcus V; Rockwell, Nathan C; Mora, Manuel; Fisher, Andrew J; Lagarias, John Clark

A far-red cyanobacteriochrome lineage specific for verdins Journal Article

Proceedings of the National Academy of Sciences, 117 (45), pp. 27962–27970, 2020.

Links | BibTeX

Jenkins, Adam J; Gottlieb, Sean Marc; Chang, Che-Wei; Kim, Peter W; Hayer, Randeep J; Hanke, Samuel J; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S

Conservation and diversity in the primary reverse photodynamics of the canonical red/green cyanobacteriochrome family Journal Article

Biochemistry, 59 (41), pp. 4015–4028, 2020.

Links | BibTeX

Fushimi, Keiji; Hasegawa, Masumi; Ito, Takeru; Rockwell, Nathan C; Enomoto, Gen; -Win, Ni-Ni; Lagarias, John Clark; Ikeuchi, Masahiko; Narikawa, Rei

Evolution-inspired design of multicolored photoswitches from a single cyanobacteriochrome scaffold Journal Article

Proceedings of the National Academy of Sciences, 117 (27), pp. 15573–15580, 2020.

Links | BibTeX

Song, Ji-Young; Lee, Ha Yong; Yang, Hee Wook; Song, Ji-Joon; Lagarias, John Clark; Park, Youn-Il

Spectral and photochemical diversity of tandem cysteine cyanobacterial phytochromes Journal Article

Journal of Biological Chemistry, 295 (19), pp. 6754–6766, 2020.

Links | BibTeX

Hu, Wei; Lagarias, John Clark

A one-tube method for rapid and reliable plant genomic DNA isolation for PCR analysis Journal Article

2020.

Links | BibTeX

2019

Hu, Wei; Lagarias, John Clark

LOF and GOF Alleles Shed Light on the Molecular Basis of phyB Signaling in Plants Journal Article

The Plant Cell, 31 (7), pp. 1400–1401, 2019.

Links | BibTeX

Kirpich, Julia S; Gottlieb, Sean M; Chang, Che-Wei; Kim, Peter W; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S

Forward photodynamics of the noncanonical red/green NpR3784 cyanobacteriochrome from Nostoc punctiforme Journal Article

Biochemistry, 58 (18), pp. 2297-2306, 2019, ISSN: 1520-4995.

Links | BibTeX

Kirpich, Julia S; Gottlieb, Sean M; Chang, Che-Wei; Kim, Peter W; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S

Reverse photodynamics of the noncanonical red/green NpR3784 cyanobacteriochrome from Nostoc punctiforme Journal Article

Biochemistry, 58 (18), pp. 2307-2317, 2019.

Links | BibTeX

Rockwell, Nathan C; Lagarias, John Clark

Phytochrome evolution in 3D: deletion, duplication, and diversification Journal Article

New Phytologist, 225 (6), pp. 2283-2300, 2019, ISSN: 1469-8137.

Links | BibTeX

Jenkins, Adam J; Gottlieb, Sean M; Chang, Che-Wei; Hayer, Randeep J; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S

Conservation and diversity in the secondary forward photodynamics of red/green cyanobacteriochromes Journal Article

Photochemical & Photobiological Sciences, 2019.

Links | BibTeX

2018

Yang, Yiling; Lam, Vinson; Adomako, Marie; Simkovsky, Ryan; Jakob, Annik; Rockwell, Nathan C; Cohen, Susan E; Taton, Arnaud; Wang, Jingtong; Lagarias, John Clark; Wilde, Annegret; Nobles, David R; Brand, Jerry J; Golden, Susan S

Phototaxis in a wild isolate of the cyanobacterium Synechococcus elongatus Journal Article

Proceedings of the National Academy of Sciences, 115 (52), 2018.

Links | BibTeX

Kirpich, Julia S; Mix, Tyler L; Martin, Shelley S; Rockwell, Nathan C; Lagarias, John Clark; Larsen, Delmar S

Protonation heterogeneity modulates the ultrafast photocycle initiation dynamics of phytochrome Cph1 Journal Article

The Journal of Physical Chemistry Letters, 9 (12), pp. 3454–3462, 2018.

Links | BibTeX

Kirpich, Julia S; Chang, Che-Wei; Madsen, Dorte; Gottlieb, Sean M; Martin, Shelley S; Rockwell, Nathan C; Lagarias, John Clark; Larsen, Delmar S

Noncanonical photodynamics of the orange/green cyanobacteriochrome power sensor NpF2164g7 from the PtxD phototaxis regulator of Nostoc punctiforme Journal Article

Biochemistry, 57 (18), pp. 2636–2648, 2018.

Links | BibTeX

Lim, Sunghyuk; Yu, Qinhong; Gottlieb, Sean M; Chang, Che-Wei; Rockwell, Nathan C; Martin, Shelley S; Madsen, Dorte; Lagarias, John Clark; Larsen, Delmar S; Ames, James B

Correlating structural and photochemical heterogeneity in cyanobacteriochrome NpR6012g4 Journal Article

Proceedings of the National Academy of Sciences, 115 (17), pp. 4387–4392, 2018.

Links | BibTeX

2017

Blain-Hartung, Matthew; Rockwell, Nathan C; Lagarias, John Clark

Light-regulated synthesis of cyclic-di-GMP by a bidomain construct of the cyanobacteriochrome Tlr0924 (SesA) without stable dimerization Journal Article

Biochemistry, 56 (46), pp. 6145–6154, 2017.

Links | BibTeX

Duanmu, Deqiang; Rockwell, Nathan C; Lagarias, John Clark

Algal light sensing and photoacclimation in aquatic environments Journal Article

Plant, Cell & Environment, 40 (11), pp. 2558-2570, 2017, ISSN: 1365-3040.

Links | BibTeX

Rockwell, Nathan C; Martin, Shelley S; Li, Fay-Wei; Mathews, Sarah; Lagarias, John Clark

The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2 Journal Article

New Phytologist, 214 (3), pp. 1145–1157, 2017.

Links | BibTeX

Baloban, Mikhail; Shcherbakova, Daria M; Pletnev, Sergei; Pletnev, Vladimir Z; Lagarias, John Clark; Verkhusha, Vladislav V

Designing brighter near-infrared fluorescent proteins: insights from structural and biochemical studies Journal Article

Chemical Science, 8 (6), pp. 4546–4557, 2017.

Links | BibTeX

2016

Hu, Wei; Lagarias, John Clark

A tightly regulated genetic selection system with signaling-active alleles of phytochrome B Journal Article

Plant Physiology, 173 (1), pp. 366–375, 2016.

Links | BibTeX

Lim, Sunghyuk; Yu, Qinhong; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Ames, James B

H-1, C-13, and N-15 chemical shift assignments of cyanobacteriochrome NpR6012g4 in the green-absorbing photoproduct state Journal Article

Biomolecular NMR Assignments, 10 (1), pp. 157-161, 2016.

BibTeX

Yu, Qinhong; Lim, Sunghyuk; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Ames, James B

H-1, N-15, and C-13 chemical shift assignments of cyanobacteriochrome NpR6012g4 in the red-absorbing dark state Journal Article

Biomolecular NMR Assignments, 10 (1), pp. 139-142, 2016.

BibTeX

Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark

Identification of cyanobacteriochromes detecting far-red light Journal Article

Biochemistry, 55 (28), pp. 3907-3919, 2016.

BibTeX

Chang, Che-Wei; Gottlieb, Sean M; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S

Tracking the secondary photodynamics of the green/red cyanobacteriochrome RcaE from Fremyella diplosiphon Journal Article

Chemical Physics Letters, 644 , pp. 225-230, 2016.

BibTeX

2015

Jones, Matthew Alan; Hu, Wei; Litthauer, Suzanne; Lagarias, John Clark; Harmer, Stacey Lynn

A constitutively active allele of phytochrome B maintains circadian robustness in the absence of light Journal Article

Plant Physiology, 169 (1), pp. 814-+, 2015.

BibTeX

Hu, Wei; Su, Yi-Shin; Lagarias, John Clark

A Light-Independent Allele of Phytochrome B Faithfully Recapitulates Photomorphogenic Transcriptional Networks (vol 2, pg 166, 2009) Journal Article

Molecular Plant, 8 (3), pp. 493, 2015.

BibTeX

Rockwell, Nathan C; Martin, Shelley S; Lim, Sunghyuk; Lagarias, John Clark; Ames, James B

Characterization of red/green cyanobacteriochrome NpR6012g4 by solution nuclear magnetic resonance spectroscopy: A hydrophobic pocket for the C15-E,anti chromophore in the photoproduct Journal Article

Biochemistry, 54 (24), pp. 3772-3783, 2015.

BibTeX

Rockwell, Nathan C; Martin, Shelley S; Lim, Sunghyuk; Lagarias, John Clark; Ames, James B

Characterization of red/green cyanobacteriochrome NpR6012g4 by solution nuclear magnetic resonance spectroscopy: A protonated bilin ring system in both photostates Journal Article

Biochemistry, 54 (16), pp. 2581-2600, 2015.

BibTeX

Gottlieb, Sean M; Kim, Peter W; Chang, Che-Wei; Hanke, Samuel J; Hayer, Randeep J; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S

Conservation and diversity in the primary forward photodynamics of red/green cyanobacteriochromes Journal Article

Biochemistry, 54 (4), pp. 1028-1042, 2015.

BibTeX

Rockwell, Nathan C; Duanmu, Deqiang; Martin, Shelley S; Bachy, Charles; Price, Dana C; Bhattacharya, Debashish; Worden, Alexandra Z; Lagarias, John Clark

Eukaryotic algal phytochromes span the visible spectrum (vol 111, pg 3871, 2014) Journal Article

Proceedings of the National Academy of Sciences of the United States of America, 112 (9), pp. E1051, 2015.

BibTeX

Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark

Identification of DXCF cyanobacteriochrome lineages with predictable photocycles Journal Article

Photochemical & Photobiological Sciences, 14 (5), pp. 929-941, 2015.

BibTeX

Rockwell, Nathan C; Martin, Shelley S; Gan, Fei; Bryant, Donald A; Lagarias, John Clark

NpR3784 is the prototype for a distinctive group of red/green cyanobacteriochromes using alternative Phe residues for photoproduct tuning Journal Article

Photochemical & Photobiological Sciences, 14 (2), pp. 258-269, 2015.

BibTeX

Berlin, Shai; Carroll, Elizabeth C; Newman, Zachary L; Okada, Hitomi O; Quinn, Carson M; Kallman, Benjamin; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Isacoff, Ehud Y

Photoactivatable genetically encoded calcium indicators for targeted neuronal imaging Journal Article

Nature Methods, 12 (9), pp. 852-+, 2015.

BibTeX

2014

Rockwell, Nathan C; Martin, Shelley S; Gulevich, Alexander G; Lagarias, John Clark

Conserved Phenylalanine Residues Are Required for Blue-Shifting of Cyanobacteriochrome Photoproducts Journal Article

Biochemistry, 53 (19), pp. 3118-3130, 2014.

BibTeX

Kim, Peter W; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S

Dynamic inhomogeneity in the photodynamics of cyanobacterial phytochrome cph1. Journal Article

Biochemistry, 53 (17), pp. 2818-26, 2014.

BibTeX

Rockwell, Nathan C; Duanmu, Deqiang; Martin, Shelley S; Bachy, Charles; Price, Dana C; Bhattacharya, Debashish; Worden, Alexandra Z; Lagarias, John Clark

Eukaryotic algal phytochromes span the visible spectrum Journal Article

Proceedings of the National Academy of Sciences of the United States of America, 111 (10), pp. 3871-3876, 2014.

BibTeX

Gan, Fei; Zhang, Shuyi; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Bryant, Donald A

Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light Journal Article

Science, 345 (6202), pp. 1312-1317, 2014.

BibTeX

Lim, Sunghyuk; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Ames, James B

H-1, N-15, and C-13 chemical shift assignments of cyanobacteriochrome NpF2164g3 in the photoproduct state Journal Article

Biomolecular Nmr Assignments, 8 (2), pp. 259-262, 2014.

BibTeX

Kim, Peter W; Rockwell, Nathan C; Martin, Shelley S; Lagarias, John Clark; Larsen, Delmar S

Heterogeneous photodynamics of the Pfr state in the cyanobacteriai phytochrome Cph1 Journal Article

Biochemistry, 53 (28), pp. 4601-4611, 2014.

BibTeX

Duanmu, Deqiang; Bachy, Charles; Sudek, Sebastian; Wong, Chee-Hong; Jimenez, Valeria; Rockwell, Nathan C; Martin, Shelley S; Ngan, Chew Yee; Reistetter, Emily N; van Baren, Marijke J; Price, Dana C; Wei, Chia-Lin; Reyes-Prieto, Adrian; Lagarias, John Clark; Worden, Alexandra Z

Marine algae and land plants share conserved phytochrome signaling systems Journal Article

Proceedings of the National Academy of Sciences of the United States of America, 111 (44), pp. 15827-15832, 2014.

BibTeX

Gottlieb, Sean M; Chang, Che-Wei; Martin, Shelley S; Rockwell, Nathan C; Lagarias, John Clark; Larsen, Delmar S

Optically guided photoactivity: Coordinating tautomerization, photoisomerization, inhomogeneity, and reactive intermediates within the RcaE cyanobacteriochrome Journal Article

Journal of Physical Chemistry Letters, 5 (9), pp. 1527-1533, 2014.

BibTeX

169 entries « 1 of 4 »